CF503985

Overview
NameCF503985
Unique NameCF503985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11118 contig Csv1_Contig11118:36..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 419.083 bits (1076), Expect = 9.474e-117
Identity = 203/211 (96.21%), Postives = 207/211 (98.10%), Query Frame = 2
Query:    2 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTKEDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 634
            NF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT+EDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVR
Sbjct:  148 NFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVR 358          
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 413.69 bits (1062), Expect = 3.980e-115
Identity = 198/211 (93.84%), Postives = 207/211 (98.10%), Query Frame = 2
Query:    2 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTKEDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 634
            NFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT++DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVR
Sbjct:  139 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVR 349          
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 413.305 bits (1061), Expect = 5.199e-115
Identity = 199/211 (94.31%), Postives = 206/211 (97.63%), Query Frame = 2
Query:    2 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTKEDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 634
            NF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT+EDRIGVCKGIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVR
Sbjct:  148 NFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVR 358          
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 406.371 bits (1043), Expect = 6.355e-113
Identity = 195/211 (92.42%), Postives = 204/211 (96.68%), Query Frame = 2
Query:    2 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTKEDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 634
            NF++LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM+KFYWAPT+EDRIG+C GIFR D V  +DIVKLVDTFPGQSIDFFGALRARVYDDEVR
Sbjct:  145 NFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 355          
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 406.371 bits (1043), Expect = 6.355e-113
Identity = 193/211 (91.47%), Postives = 205/211 (97.16%), Query Frame = 2
Query:    2 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTKEDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 634
            NFM+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNK ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPT++DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVR
Sbjct:  138 NFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVR 348          
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 405.601 bits (1041), Expect = 1.084e-112
Identity = 198/211 (93.84%), Postives = 205/211 (97.16%), Query Frame = 2
Query:    2 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTKEDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 634
            NFM+LPN+KVPLILGIWGGKGQGKSFQCELVFAKM I+PIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT+EDRIGVC GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVR
Sbjct:  148 NFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 358          
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 3.154e-112
Identity = 198/211 (93.84%), Postives = 203/211 (96.21%), Query Frame = 2
Query:    2 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTKEDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 634
            NFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN GEPAKLIRQRYREAADII KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT+EDRIGVCKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVR
Sbjct:  136 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVR 345          
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 402.134 bits (1032), Expect = 1.198e-111
Identity = 194/211 (91.94%), Postives = 202/211 (95.73%), Query Frame = 2
Query:    2 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTKEDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 634
            NFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT++DR+GVCKGIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVR
Sbjct:  150 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVR 360          
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 402.134 bits (1032), Expect = 1.198e-111
Identity = 194/211 (91.94%), Postives = 201/211 (95.26%), Query Frame = 2
Query:    2 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTKEDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 634
            NF++LPNIKVPLILGIWGGKGQGKSFQCELV AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGRMEKFYWAPT+EDRIGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct:  148 NFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358          
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 2.044e-111
Identity = 192/211 (91.00%), Postives = 203/211 (96.21%), Query Frame = 2
Query:    2 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTKEDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 634
            NF++LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT+EDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVR
Sbjct:  147 NFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVR 357          
The following BLAST results are available for this feature:
BLAST of CF503985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCA1_LARTR9.474e-11796.21Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ3.980e-11593.84Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR5.199e-11594.31Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA6.355e-11392.42Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU6.355e-11391.47Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO1.084e-11293.84Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU3.154e-11293.84Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU1.198e-11191.94Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.198e-11191.94Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN2.044e-11191.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-473 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503985 ID=CF503985; Name=CF503985; organism=Citrus sinensis; type=EST; length=635bp
GAACTTCATGTCCCTGCCCAACATCAAGGTTCCTCTCATCTTGGGTATTT
GGGGAGGCAAAGGACAAGGAAAATCATTCCAATGTGAGCTTGTTTTCGCC
AAGATGGGCATCAACCCAATTATGATGAGTGCCGGAGAATTGGAAAGTGG
CAATGCTGGAGAACCCGCTAAGTTGATCAGGCAGAGGTACCGTGAGGCAG
CTGACATTATCAGGAAGGGAAAAATGTGCTGCCTCATGATCAATGATCTT
GATGCAGGAGCTGGTCGTATGGGTGGCACCACCCAGTACACAGTTAACAA
CCAAATGGTTAACGCCACACTCATGAACATTGCTGATAACCCAACTTGTG
TCCAACTCCCTGGTATGTACAACAAGGAGGAGAACCCCCGTGTCCCAATC
ATAGTCACCGGTAATGACTTCTCAACATTGTATGCTCCTCTCATCCGTGA
TGGTCGTATGGAGAAATTCTACTGGGCACCTACAAAGGAGGACCGTATTG
GTGTGTGCAAGGGTATCTTCAGGAATGACAATGTGGCTGATGACGACATT
GTCAAGCTTGTTGACACCTTCCCCGGCCAATCCATTGATTTCTTTGGAGC
CCTGAGGGCCAGAGTCTATGATGATGAGGTGAGGA
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