CF503995

Overview
NameCF503995
Unique NameCF503995
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig716 contig Csv1_Contig716:16..432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503995 vs. ExPASy Swiss-Prot
Match: PFD2_ARATH (Probable prefoldin subunit 2 OS=Arabidopsis thaliana GN=At3g22480 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.723e-28
Identity = 61/76 (80.26%), Postives = 66/76 (86.84%), Query Frame = 3
Query:  189 REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRN 416
            REP NEQ V NMY   RSEL+QIYS IT+LEM+ SEHSLVINAI+PLD SRKC+RMIGGVLVERTI EVLPAVQRN
Sbjct:   11 REPPNEQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQSRKCFRMIGGVLVERTIKEVLPAVQRN 86          
BLAST of CF503995 vs. ExPASy Swiss-Prot
Match: PFD2_HUMAN (Prefoldin subunit 2 OS=Homo sapiens GN=PFDN2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.029e-16
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  204 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRN 416
            EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT+ EVLPA++ N
Sbjct:   24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALENN 93          
BLAST of CF503995 vs. ExPASy Swiss-Prot
Match: PFD2_BOVIN (Prefoldin subunit 2 OS=Bos taurus GN=PFDN2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.029e-16
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  204 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRN 416
            EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT+ EVLPA++ N
Sbjct:   24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALENN 93          
BLAST of CF503995 vs. ExPASy Swiss-Prot
Match: PFD2_RAT (Prefoldin subunit 2 OS=Rattus norvegicus GN=Pfdn2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.461e-16
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  204 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRN 416
            EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT+ EVLPA++ N
Sbjct:   24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALEGN 93          
BLAST of CF503995 vs. ExPASy Swiss-Prot
Match: PFD2_MOUSE (Prefoldin subunit 2 OS=Mus musculus GN=Pfdn2 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.461e-16
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  204 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRN 416
            EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT+ EVLPA++ N
Sbjct:   24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALEGN 93          
BLAST of CF503995 vs. ExPASy Swiss-Prot
Match: PFD2_DICDI (Probable prefoldin subunit 2 OS=Dictyostelium discoideum GN=pfdn2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.718e-15
Identity = 35/79 (44.30%), Postives = 58/79 (73.42%), Query Frame = 3
Query:  180 TERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRN 416
            +++++ + E  +   Y  ++S+  QI S+I+E E +  E+ LVINAI+ L+ +RKC+RM+GGVLVERT+ EVLP +++N
Sbjct:    2 SQQKQQLTENQIIEHYKDLKSQQQQIISRISEFESDVGEYGLVINAIQNLESNRKCFRMVGGVLVERTVGEVLPQIKQN 80          
BLAST of CF503995 vs. ExPASy Swiss-Prot
Match: PFD2_SCHPO (Probable prefoldin subunit 2 OS=Schizosaccharomyces pombe GN=SPAC227.10 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.742e-13
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 3
Query:  192 EPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQ 410
            +P  +QI+   Y S +S L QI  KI +LE +A EH LV++ +  +D +R+C+RMI GVLVERT+  V+P ++
Sbjct:    4 QPSRQQILQTQYNSYKSRLQQIAQKIVDLETDADEHKLVMDTLNSMDNNRRCFRMIHGVLVERTVGTVVPILK 76          
BLAST of CF503995 vs. ExPASy Swiss-Prot
Match: PFD2_DROME (Probable prefoldin subunit 2 OS=Drosophila melanogaster GN=l(3)01239 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.152e-11
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 3
Query:  180 TERREP-VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRN 416
            TE  +P ++++ +   +  +R+E   + + +  LEM+  EH  VI  ++  DP RKC+R IGGVL ERT+ EVLP +  N
Sbjct:    3 TESAKPALSQEAIVAQFQQLRNEQRNLVNSLNTLEMDLREHKTVIETLEAADPERKCFRQIGGVLCERTVKEVLPQLVEN 82          
The following BLAST results are available for this feature:
BLAST of CF503995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PFD2_ARATH6.723e-2880.26Probable prefoldin subunit 2 OS=Arabidopsis thalia... [more]
PFD2_HUMAN2.029e-1656.34Prefoldin subunit 2 OS=Homo sapiens GN=PFDN2 PE=1 ... [more]
PFD2_BOVIN2.029e-1656.34Prefoldin subunit 2 OS=Bos taurus GN=PFDN2 PE=2 SV... [more]
PFD2_RAT3.461e-1656.34Prefoldin subunit 2 OS=Rattus norvegicus GN=Pfdn2 ... [more]
PFD2_MOUSE3.461e-1656.34Prefoldin subunit 2 OS=Mus musculus GN=Pfdn2 PE=2 ... [more]
PFD2_DICDI1.718e-1544.30Probable prefoldin subunit 2 OS=Dictyostelium disc... [more]
PFD2_SCHPO2.742e-1345.21Probable prefoldin subunit 2 OS=Schizosaccharomyce... [more]
PFD2_DROME1.152e-1138.75Probable prefoldin subunit 2 OS=Drosophila melanog... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-483 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503995 ID=CF503995; Name=CF503995; organism=Citrus sinensis; type=EST; length=417bp
TTTAAATTGCTGGACTTAAACGTCACCGTTTATCTTGGTTTTTCCGGTTT
GCTCTCTCCGTCTCTCTTCAAGTCCTGAGACCTGAGTTTCTGCTCCCTCT
TGTCTAGGGTTAGGACCTAGGGAGGGTTCACGCACTTAAATTAGATTCAA
GAATCAGAATCATGGCTGGCAGAGCTGAAACTGAGCGCAGGGAACCGGTA
AATGAACAAATAGTGGCAAATATGTACACATCTATGAGATCTGAACTAAA
TCAAATCTACTCGAAAATTACCGAACTGGAGATGGAGGCAAGTGAGCACT
CATTGGTTATTAATGCTATTAAGCCACTTGACCCTTCTAGAAAGTGCTAC
CGGATGATTGGAGGTGTGCTGGTGGAGAGAACAATCAGTGAAGTCCTTCC
TGCTGTGCAACGCAATA
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