CF503998

Overview
NameCF503998
Unique NameCF503998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF503998_ssr1 microsatellite CF503998_ssr1:1..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503998 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.812e-15
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:  343 MMLVKWLGSVVFLAIGLFTNVLGAYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSRVEL 561
            M+L +W    + L + +      A++GVNIGTD++NMP  SDIV +L++ QITHVRLYDA+SHMLKA +   +
Sbjct:    1 MLLPRWFAEALLLLLSILACSNAAFIGVNIGTDLTNMPPPSDIVTLLKSQQITHVRLYDANSHMLKAFANTSI 73
The following BLAST results are available for this feature:
BLAST of CF503998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
E134_ARATH2.812e-1549.32Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-486 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503998 ID=CF503998; Name=CF503998; organism=Citrus sinensis; type=EST; length=563bp
GAGAGAGAGAGAGAGAACTAGTCTCGAGTTTTTTTTTAAAAATCTTTTCA
GATTCTGTCTTAAAGTTTTCTTTGTACTGGGGAAGTCAGTTACTTTAGTT
TTGCGACTGAAAACAAAAACACCTCTGAGTTTTATGAGGTTTTGCTGATT
CGTTCAAGGAAGCTTAAAAAGGGGAAGAAGCTTTTGTGGCATCTGTGAGC
TCAGGCAATTTGGATCGGGACCTTGCAGTCAGCTATTGGCATCAAATTCC
ATTTTTGTGTGTTTCTGGAAGCTTTGGCAGTCTGATCTCCATCTTGGAGT
AATTGACTGGACTGAAGGTGTAGGTTAAAGTTTGTTGGACAGATGATGCT
TGTAAAATGGCTTGGAAGTGTGGTTTTTCTTGCAATTGGCCTCTTTACCA
ACGTGTTAGGTGCATATGTTGGTGTAAACATCGGAACAGATGTTTCCAAC
ATGCCATCAGCTTCAGATATTGTTGCAATACTTAGAGCCAATCAAATTAC
TCACGTACGCCTTTATGACGCTGACAGTCACATGCTGAAAGCCCTTTCAA
GAGTGGAATTGAG
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