CF504002

Overview
NameCF504002
Unique NameCF504002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9272 contig Csv1_Contig9272:41..381. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.548e-19
Identity = 45/61 (73.77%), Postives = 45/61 (73.77%), Query Frame = 2
Query:   59 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPT 241
            EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDT                GAKAKTNFPT
Sbjct:   22 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPT 82          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.652e-18
Identity = 42/64 (65.62%), Postives = 45/64 (70.31%), Query Frame = 2
Query:   59 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNE 250
            E+ +RGVRKRPWGRYAAEIRDPGKKTRVWLGTFDT                G+KAKTNFP P E
Sbjct:   30 EVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGE 93          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.652e-18
Identity = 42/64 (65.62%), Postives = 45/64 (70.31%), Query Frame = 2
Query:   59 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNE 250
            E+ YRGVRKRPWGRYAAEIRDPGKK+RVWLGTFDT                G KAKTNFP+P E
Sbjct:   24 EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPSPTE 87          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.157e-18
Identity = 42/64 (65.62%), Postives = 45/64 (70.31%), Query Frame = 2
Query:   59 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNE 250
            E+ YRGVRKRPWGRYAAEIRDPGKK+RVWLGTFDT                G KAKTNFP P+E
Sbjct:   24 EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPLPSE 87          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.826e-17
Identity = 41/62 (66.13%), Postives = 43/62 (69.35%), Query Frame = 2
Query:   59 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 244
            E+ YRGVRKRPWGRYAAEIRDP KKTRVWLGTFDT                G KAKTNFP+P
Sbjct:    9 EVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPSP 70          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.063e-17
Identity = 41/62 (66.13%), Postives = 43/62 (69.35%), Query Frame = 2
Query:   62 IRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPN 247
            +RYRGVRKRPWGRYAAEIRDP KK+RVWLGTFDT                GAKAKTNFP  N
Sbjct:   18 VRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFPCYN 79          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.546e-16
Identity = 40/62 (64.52%), Postives = 43/62 (69.35%), Query Frame = 2
Query:   59 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 244
            EIR+RGVRKRPWGR+AAEIRDP KKTRVWLGTFD+                G KAKTNFP P
Sbjct:   25 EIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFPLP 86          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.019e-16
Identity = 41/59 (69.49%), Postives = 41/59 (69.49%), Query Frame = 2
Query:   59 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNF 235
            EIRYRGVRKRPWGRYAAEIRDP KKTRVWLGTFDT                G KAKTNF
Sbjct:   28 EIRYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.915e-15
Identity = 38/60 (63.33%), Postives = 41/60 (68.33%), Query Frame = 2
Query:   59 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 238
            EIR+RGVRKRPWGR+AAEIRDP KK RVWLGTFD+                G KAKTNFP
Sbjct:   25 EIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFP 84          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.483e-15
Identity = 38/60 (63.33%), Postives = 41/60 (68.33%), Query Frame = 2
Query:   59 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 238
            E RYRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+                G KAKTNFP
Sbjct:   24 EPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFP 83          
The following BLAST results are available for this feature:
BLAST of CF504002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ERF78_ARATH2.548e-1973.77Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF80_ARATH1.652e-1865.63Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF4_TOBAC1.652e-1865.63Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF4_NICSY2.157e-1865.63Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF81_ARATH1.826e-1766.13Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF76_ARATH9.063e-1766.13Ethylene-responsive transcription factor 11 OS=Ara... [more]
ERF3_TOBAC1.546e-1664.52Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF79_ARATH2.019e-1669.49Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF82_ARATH2.915e-1563.33Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF83_ARATH8.483e-1563.33Ethylene-responsive transcription factor 7 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-490 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504002 ID=CF504002; Name=CF504002; organism=Citrus sinensis; type=EST; length=341bp
TCCGAGAGATAAGCTCAACAAACCATCCTCTAACCCGAATCCGAATTCGA
AGGATATGGAGATCCGATACAGAGGAGTGAGGAAGCGGCCGTGGGGGCGT
TACGCCGCCGAGATCCGGGACCCGGGGAAGAAAACCCGCGTCTGGCTCGG
CACCTTCGACACCGCCGAGGAAGCAGCACGTGCCTACGACGCAGCAGCGC
GTGAGTTCCGCGGCGCCAAAGCCAAGACAAACTTCCCAACGCCAAACGAA
ATCCTTGGCACCCTCGCCCGCAGCCCCAGCCAGAGCAGCACCGTGGAGTC
ATCCTCTCCTCCTCCGCCGACGCTGCTGCCACAGCCACAGC
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