CF504009

Overview
NameCF504009
Unique NameCF504009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504009 vs. ExPASy Swiss-Prot
Match: PER1_ARAHY (Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.631e-32
Identity = 69/118 (58.47%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    1 HPIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSAGFANSMIKMGNINVLTGNKGQI 351
            H IG A+C+AFR RIYN +NIDP +AK  Q  CPS GGD+NL+PFD  TP  FD  Y+ +L  K+GLL SDQ LFNG STD  V  YS N   F+  F N+MIKMGN++ LTG  GQI
Sbjct:  191 HTIGQAQCTAFRTRIYNESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQI 308          
BLAST of CF504009 vs. ExPASy Swiss-Prot
Match: PER4_VITVI (Peroxidase 4 OS=Vitis vinifera GN=GSVIVT00023967001 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.633e-32
Identity = 70/120 (58.33%), Postives = 86/120 (71.67%), Query Frame = 1
Query:    1 HPIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGG--DSNLAPFD-PTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSAGFANSMIKMGNINVLTGNKGQI 351
            H IG ARC++FR RIYN TNID  FAK RQ +CPS  G  D+NLAP D  TP TFD  Y+ +L+ ++GLL SDQ L+NGGSTD  VKTY  N K F++ F   MIKMG+I  LTG++G+I
Sbjct:  194 HTIGQARCTSFRARIYNETNIDSSFAKTRQASCPSASGSGDNNLAPLDLQTPTTFDNYYYKNLINQKGLLHSDQVLYNGGSTDSTVKTYVNNPKTFTSDFVAGMIKMGDITPLTGSEGEI 313          
BLAST of CF504009 vs. ExPASy Swiss-Prot
Match: PER52_ARATH (Peroxidase 52 OS=Arabidopsis thaliana GN=PER52 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.441e-30
Identity = 68/120 (56.67%), Postives = 85/120 (70.83%), Query Frame = 1
Query:    1 HPIGFARCSAFRNRIYNATNIDPDFAKERQRTCP--STGGDSNLAPFD-PTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSAGFANSMIKMGNINVLTGNKGQI 351
            H IG +RC+ FR RIYN TNI+  FA  RQRTCP  S  GD NLAP D  T  +FD  YF +L+ +RGLL SDQ LFNGGSTD +V+ YS N  +F++ F  +MIKMG+I+ LTG+ G+I
Sbjct:  197 HTIGQSRCTNFRARIYNETNINAAFATTRQRTCPRASGSGDGNLAPLDVTTAASFDNNYFKNLMTQRGLLHSDQVLFNGGSTDSIVRGYSNNPSSFNSDFTAAMIKMGDISPLTGSSGEI 316          
BLAST of CF504009 vs. ExPASy Swiss-Prot
Match: PER68_ARATH (Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.292e-29
Identity = 68/120 (56.67%), Postives = 83/120 (69.17%), Query Frame = 1
Query:    1 HPIGFARCSAFRNRIYNATNIDPDFAKERQRTCPST--GGDSNLAPFD-PTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSAGFANSMIKMGNINVLTGNKGQI 351
            H IG ARC  FR+RIYN+TNID  FA  R+R+CP+    GD+N A  D  TP  FDG YF  L+  RGLL SDQ LFNGGSTD +V +YS + +AF   F  +MIKMG+I+ LTG+ GQI
Sbjct:  198 HTIGQARCVTFRSRIYNSTNIDLSFALSRRRSCPAATGSGDNNAAILDLRTPEKFDGSYFMQLVNHRGLLTSDQVLFNGGSTDSIVVSYSRSVQAFYRDFVAAMIKMGDISPLTGSNGQI 317          
BLAST of CF504009 vs. ExPASy Swiss-Prot
Match: PER70_MAIZE (Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.688e-29
Identity = 66/120 (55.00%), Postives = 83/120 (69.17%), Query Frame = 1
Query:    1 HPIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGG--DSNLAPFDP-TPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSAGFANSMIKMGNINVLTGNKGQI 351
            H IG A+C  FR  IYN TN++  FA  R+  CP+  G  D NLAP D  TP  FD  Y+++LL +RGLL SDQ LFNGG+TDGLV+TY+   + FS  FA +MI+MGNI+ LTG +GQI
Sbjct:  194 HTIGLAQCKNFRAHIYNDTNVNAAFATLRRANCPAAAGNGDGNLAPLDTATPTAFDNAYYTNLLAQRGLLHSDQQLFNGGATDGLVRTYASTPRRFSRDFAAAMIRMGNISPLTGTQGQI 313          
BLAST of CF504009 vs. ExPASy Swiss-Prot
Match: PER2_ORYSJ (Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PRX112 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.204e-29
Identity = 67/120 (55.83%), Postives = 83/120 (69.17%), Query Frame = 1
Query:    1 HPIGFARCSAFRNRIYNATNIDPDFAKERQRTCPS-TG-GDSNLAPFDPT-PLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSAGFANSMIKMGNINVLTGNKGQI 351
            H IG A+C  FR+R+YN TNID  FA   +  CP  TG GDSNLAP D T P  FD  Y+++LL  +GLL SDQ LFNGGSTD  V+ +S N  AF++ F  +M+KMGNI+ LTG +GQI
Sbjct:  187 HTIGQAQCQNFRDRLYNETNIDSSFATALKANCPRPTGSGDSNLAPLDTTTPNAFDSAYYTNLLSNKGLLHSDQVLFNGGSTDNTVRNFSSNTAAFNSAFTAAMVKMGNISPLTGTQGQI 306          
BLAST of CF504009 vs. ExPASy Swiss-Prot
Match: PER2_ORYSI (Peroxidase 2 OS=Oryza sativa subsp. indica GN=PRX112 PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.879e-29
Identity = 67/120 (55.83%), Postives = 83/120 (69.17%), Query Frame = 1
Query:    1 HPIGFARCSAFRNRIYNATNIDPDFAKERQRTCPS-TG-GDSNLAPFDPT-PLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSAGFANSMIKMGNINVLTGNKGQI 351
            H IG A+C  FR+R+YN TNID  FA   +  CP  TG GDSNLAP D T P  FD  Y+++LL  +GLL SDQ LFNGGSTD  V+ +S N  AF++ F  +M+KMGNI+ LTG +GQI
Sbjct:  187 HTIGQAQCQNFRDRLYNETNIDSSFATALKANCPRPTGSGDSNLAPLDTTTPNAFDSAYYTNLLSNKGLLHSDQVLFNGGSTDNTVRNFSSNTAAFNSAFTVAMVKMGNISPLTGTQGQI 306          
BLAST of CF504009 vs. ExPASy Swiss-Prot
Match: PERX_NICSY (Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.760e-29
Identity = 67/119 (56.30%), Postives = 83/119 (69.75%), Query Frame = 1
Query:    1 HPIGFARCSAFRNRIY-NATNIDPDFAKERQRTCPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSAGFANSMIKMGNINVLTGNKGQI 351
            H IG A+C  FR+RIY N T+ID  FA  R+R CP  G + NLAP D  TP  FD  YF +L+QK+GLL SDQ LFNGGSTD +V  YS + +AFS+ FA +MIKMG+I+ L+G  G I
Sbjct:  196 HTIGQAQCFLFRDRIYSNGTDIDAGFASTRRRQCPQEGENGNLAPLDLVTPNQFDNNYFKNLIQKKGLLQSDQVLFNGGSTDNIVSEYSNSARAFSSDFAAAMIKMGDISPLSGQNGII 314          
BLAST of CF504009 vs. ExPASy Swiss-Prot
Match: PER5_ARATH (Peroxidase 5 OS=Arabidopsis thaliana GN=PER5 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 6.413e-29
Identity = 64/120 (53.33%), Postives = 86/120 (71.67%), Query Frame = 1
Query:    1 HPIGFARCSAFRNRIY-NATNIDPDFAKERQRTCPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQKRGLLISDQALF-NGGSTDGLVKTYSLNFKAFSAGFANSMIKMGNINVLTGNKGQI 351
            H IG ++C  FR+R+Y N+++ID  FA  R+R CP+ GGD NLA  D  TP +FD  Y+ +L+QK+GLL++DQ LF +G STDG+V  YS N   F+A FA +MIKMGNI  LTG+ G+I
Sbjct:  194 HTIGQSQCFLFRDRLYENSSDIDAGFASTRKRRCPTVGGDGNLAALDLVTPNSFDNNYYKNLMQKKGLLVTDQVLFGSGASTDGIVSEYSKNRSKFAADFATAMIKMGNIEPLTGSNGEI 313          
BLAST of CF504009 vs. ExPASy Swiss-Prot
Match: PERP7_BRARA (Peroxidase P7 OS=Brassica rapa PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 3.183e-28
Identity = 65/120 (54.17%), Postives = 84/120 (70.00%), Query Frame = 1
Query:    1 HPIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGG--DSNLAPFDPTPLT-FDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSAGFANSMIKMGNINVLTGNKGQI 351
            H IG +RC  FR R+YN TNI+  FA  RQR+CP   G  D+NLAP D    T FD  YF +L+ +RGLL SDQ LFNGGSTD +V+ YS +  +F++ FA +MIKMG+I+ LTG+ G+I
Sbjct:  169 HTIGQSRCVNFRARVYNETNINAAFATLRQRSCPRAAGSGDANLAPLDINSATSFDNSYFKNLMAQRGLLHSDQVLFNGGSTDSIVRGYSNSPSSFNSDFAAAMIKMGDISPLTGSSGEI 288          
The following BLAST results are available for this feature:
BLAST of CF504009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PER1_ARAHY1.631e-3258.47Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 ... [more]
PER4_VITVI3.633e-3258.33Peroxidase 4 OS=Vitis vinifera GN=GSVIVT0002396700... [more]
PER52_ARATH4.441e-3056.67Peroxidase 52 OS=Arabidopsis thaliana GN=PER52 PE=... [more]
PER68_ARATH1.292e-2956.67Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=... [more]
PER70_MAIZE1.688e-2955.00Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1[more]
PER2_ORYSJ2.204e-2955.83Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PR... [more]
PER2_ORYSI2.879e-2955.83Peroxidase 2 OS=Oryza sativa subsp. indica GN=PRX1... [more]
PERX_NICSY3.760e-2956.30Lignin-forming anionic peroxidase OS=Nicotiana syl... [more]
PER5_ARATH6.413e-2953.33Peroxidase 5 OS=Arabidopsis thaliana GN=PER5 PE=2 ... [more]
PERP7_BRARA3.183e-2854.17Peroxidase P7 OS=Brassica rapa PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-497 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504009 ID=CF504009; Name=CF504009; organism=Citrus sinensis; type=EST; length=469bp
CACCCTATTGGCTTTGCTCGGTGCAGTGCCTTTCGAAACCGCATATACAA
CGCAACAAACATCGACCCCGACTTTGCTAAAGAGCGCCAAAGGACTTGCC
CGAGCACAGGAGGAGACTCGAACCTCGCACCTTTTGACCCAACGCCATTA
ACCTTCGATGGCAAATATTTTTCTAGTCTGTTGCAGAAACGAGGGCTACT
TATCTCAGATCAAGCACTTTTCAATGGGGGCTCAACCGATGGGCTTGTTA
AAACTTATAGCCTTAATTTCAAAGCCTTCTCTGCTGGTTTTGCAAACTCT
ATGATCAAGATGGGGAACATTAACGTTTTGACAGGGAATAAAGGTCAAAT
TCGTTCGAACTGCAGGAGGGTGAACAACTAAAGACGTTGTCGTTTTGGGT
TTTTATTTGAAATGAATTTGTGTGTTCAAGAATTGAGTGAAAATTGTTTT
AAAACACCATGTGCCGTTT
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