CF504014

Overview
NameCF504014
Unique NameCF504014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504014 vs. ExPASy Swiss-Prot
Match: DHKJ_DICDI (Hybrid signal transduction histidine kinase J OS=Dictyostelium discoideum GN=dhkJ PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 50/136 (36.76%), Postives = 71/136 (52.21%), Query Frame = 1
Query:   70 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 477
            IL+ +DN VN+R+A   L+K G  V   + G  AV   +    FD   MD+QMP   GF+AT QIR  E+E                  G+ H PI+AMTA  +     +C++ GMDDY+SKP   +QL   + ++
Sbjct: 1731 ILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVAS-SQLRKFDLILMDVQMPHCGGFEATAQIRKREHE-----------------QGI-HTPIIAMTAHALARDRVKCLEAGMDDYISKPINPDQLKAMIEKY 1847          
BLAST of CF504014 vs. ExPASy Swiss-Prot
Match: DHKL_DICDI (Hybrid signal transduction histidine kinase L OS=Dictyostelium discoideum GN=dhkL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13
Identity = 44/139 (31.65%), Postives = 73/139 (52.52%), Query Frame = 1
Query:   67 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPH--NFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 477
            ++LVVDDN +N ++    L+  G  V  V  G  A+ K+      ++DA F+D+QMP+MDGFQ + +IR  E + +                 L  V I+A TA+V +    +C   GMDD++SKP +  ++   + ++
Sbjct: 1570 KVLVVDDNHINIQILSKMLQTVGCEVDSVLSGADALAKINQSSGDSYDAIFLDIQMPDMDGFQVSRKIREREKKFS-----------------LPRVAIIATTANVFKEDQLKCFDAGMDDFISKPIKRAEIKEIIKKY 1691          
BLAST of CF504014 vs. ExPASy Swiss-Prot
Match: GACS_PSESY (Sensor protein gacS OS=Pseudomonas syringae pv. syringae GN=gacS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.174e-13
Identity = 48/140 (34.29%), Postives = 70/140 (50.00%), Query Frame = 1
Query:   58 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 477
            +  ++L VDDN  N  + +  L+  GA V  V+ G AAV+ +     FD   MD+QMP MDG QAT  IR  E E N+                   +PI+A+TA  +       ++ GMDDY++KP  + QL   V ++
Sbjct:  655 RAPRVLCVDDNPANLLLVQTLLEDMGAEVVAVEGGYAAVNAVQQ-EAFDLVLMDVQMPGMDGRQATEAIRAWEAERNQS-----------------SLPIVALTAHAMANEKRSLLQSGMDDYLTKPISERQLAQVVLKW 776          
BLAST of CF504014 vs. ExPASy Swiss-Prot
Match: DHKI_DICDI (Hybrid signal transduction histidine kinase I OS=Dictyostelium discoideum GN=dhkI-1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.146e-13
Identity = 43/139 (30.94%), Postives = 72/139 (51.80%), Query Frame = 1
Query:   64 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN----FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 468
            +++LV +DN +N+++ +  L K G  +T    G+ A+D      N    +D   MD+QMP + G +AT  IR +E                  N G  H+PI+A+TA  ++   E+ ++ G+DDYV+KP   + LY  +
Sbjct: 1550 QKVLVAEDNTMNQKLIKTLLTKRGFDITIAKDGKQALDFYHESKNKSILYDCILMDIQMPILSGLEATCAIREIE-----------------ANEG-GHIPIIAVTAHAMKGDKEKFLESGVDDYVTKPINPKLLYEVI 1670          
BLAST of CF504014 vs. ExPASy Swiss-Prot
Match: DHKM_DICDI (Hybrid signal transduction histidine kinase M OS=Dictyostelium discoideum GN=dhkM PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 41/126 (32.54%), Postives = 65/126 (51.59%), Query Frame = 1
Query:   70 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN-FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFE 444
            IL+V+DN+VN ++A   L+KH   V     G+ A++++   H+ FD   MD+ MP MDG   +   R  E E                  GL H+PI+A+TAD        C++ G ++++SKP +
Sbjct: 2263 ILLVEDNLVNAKIAMTVLRKHNFRVELSKNGQLAMERIKQSHSSFDLILMDIHMPVMDGITCSKLTRKFETEH-----------------GLKHLPIIALTADATTGHKNLCLEAGCNEFMSKPLD 2371          
BLAST of CF504014 vs. ExPASy Swiss-Prot
Match: DHKA_DICDI (Hybrid signal transduction histidine kinase A OS=Dictyostelium discoideum GN=dhkA PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.687e-12
Identity = 48/152 (31.58%), Postives = 73/152 (48.03%), Query Frame = 1
Query:   22 QKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 477
            Q R  P L      K+ L+V+DN +NR+V     KK    ++  + GR A+ ++T    FD  FMD QMP +DGFQ T  IR  E E N +                  + I+A++A    +  + C+  GMD ++ KP     L  A+A++
Sbjct: 2011 QGRDTPVLQPPAYRKKALIVEDNELNRKVLAQLFKKIDWTISFAENGREALKEITGERCFDIVFMDCQMPVLDGFQTTKIIRSKERENNWK-----------------RMNIVALSAGSSSSFVQDCLDSGMDSFMGKPITLATLKDALAKW 2145          
BLAST of CF504014 vs. ExPASy Swiss-Prot
Match: DHKB_DICDI (Hybrid signal transduction histidine kinase B OS=Dictyostelium discoideum GN=dhkB PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.510e-12
Identity = 47/134 (35.07%), Postives = 70/134 (52.24%), Query Frame = 1
Query:   58 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLE-NEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 456
            K ++IL+V+DN VN ++    LK  G I      G  AV+       +D   MD QMPEMDGF+AT  IR LE + + E   S + S          HV I+A+TA+      ++C+  GM+D++ KP +   +
Sbjct: 1837 KIEKILLVEDNFVNVKIFSKLLKDSGYIFDVAHNGVEAVE-CVKKGAYDLILMDCQMPEMDGFEATTAIRELEKSNLIESPPSKKHS----------HVVIVALTANSGYKDKQKCLSVGMNDFLQKPIKTSDI 1959          
The following BLAST results are available for this feature:
BLAST of CF504014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
DHKJ_DICDI2.597e-1536.76Hybrid signal transduction histidine kinase J OS=D... [more]
DHKL_DICDI1.861e-1331.65Hybrid signal transduction histidine kinase L OS=D... [more]
GACS_PSESY3.174e-1334.29Sensor protein gacS OS=Pseudomonas syringae pv. sy... [more]
DHKI_DICDI4.146e-1330.94Hybrid signal transduction histidine kinase I OS=D... [more]
DHKM_DICDI7.072e-1332.54Hybrid signal transduction histidine kinase M OS=D... [more]
DHKA_DICDI2.687e-1231.58Hybrid signal transduction histidine kinase A OS=D... [more]
DHKB_DICDI3.510e-1235.07Hybrid signal transduction histidine kinase B OS=D... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-502 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504014 ID=CF504014; Name=CF504014; organism=Citrus sinensis; type=EST; length=487bp
GAAAGCTCTAAGAAGTTGCAACAAAAAAGAAAGAAGCCATCACTGGGGCA
CCTATTAAAAGGAAAACAAATTTTGGTGGTGGATGACAATATGGTCAATA
GAAGAGTGGCAGAAGGTGCTTTAAAGAAACATGGAGCAATCGTTACTTGT
GTGGACTGCGGCAGGGCTGCTGTAGATAAGCTTACACCACCCCATAACTT
TGATGCCTGCTTCATGGATCTGCAAATGCCAGAAATGGATGGGTTTCAAG
CAACTTGGCAAATCCGCCACCTCGAGAATGAGATTAATGAGCAAATTGCA
TCTGGTGAATCATCGGCTGAGATGTTTGGAAATGTGGGTCTGTGGCATGT
ACCAATATTAGCTATGACAGCTGATGTCATTCAGGCCTCAAATGAACAGT
GCATGAAATGTGGGATGGATGATTATGTGTCAAAGCCTTTTGAAGATGAG
CAACTTTATACAGCAGTGGCACGATTCTTTATGTCTG
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