CF504016

Overview
NameCF504016
Unique NameCF504016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length323
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3382 contig Csv1_Contig3382:553..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_PECCP (Bifunctional polymyxin resistance protein arnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.523e-14
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 3
Query:  105 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ED S  I G I KQRW Y+ +KQL++R+I+A GA+NGL FT+ RPFNW+GPR+D
Sbjct:  452 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLD 505          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ERWCT (Bifunctional polymyxin resistance protein arnA OS=Erwinia carotovora subsp. atroseptica GN=arnA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.523e-14
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 3
Query:  105 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ED S  I G I KQRW Y+ +KQL++R+I+A GA+NGL FT+ RPFNW+GPR+D
Sbjct:  453 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLD 506          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP7 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.586e-14
Identity = 31/54 (57.41%), Postives = 44/54 (81.48%), Query Frame = 3
Query:  105 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ED+S  + G I KQRW Y+ +KQL++R+I+A G +NGL+FT+ RPFNW+GPR+D
Sbjct:  446 EDSSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKNGLKFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_SODGM (Bifunctional polymyxin resistance protein arnA OS=Sodalis glossinidius (strain morsitans) GN=arnA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.252e-13
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 3
Query:    3 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG            +  DP   V  ED S  I G I KQRW Y+ +KQL++R+++A G + GL FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYG------------MCTDP---VFDEDDSSLIVGPINKQRWIYSVSKQLLDRVLWAYGEKEGLRFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_SERP5 (Bifunctional polymyxin resistance protein arnA OS=Serratia proteamaculans (strain 568) GN=arnA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.635e-13
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 3
Query:  105 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ED S  I G I KQRW Y+ +KQL++R+I+A GA+ GL+FT+ RPFNW+GPR+D
Sbjct:  446 EDHSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKEGLKFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_PROMH (Bifunctional polymyxin resistance protein arnA OS=Proteus mirabilis (strain HI4320) GN=arnA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.635e-13
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 3
Query:  105 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ED S  I G I KQRW Y+ +KQL++R+I+A GA+ GL+FT+ RPFNW+GPR+D
Sbjct:  446 EDNSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKEGLKFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_YERPY (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.789e-13
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  105 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  446 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_YERPS (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis GN=arnA PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.789e-13
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  105 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  446 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_YERPP (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis (strain Pestoides F) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.789e-13
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  105 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  446 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_YERPN (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.789e-13
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  105 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  446 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLD 499          
The following BLAST results are available for this feature:
BLAST of CF504016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_PECCP2.523e-1461.11Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWCT2.523e-1461.11Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_KLEP79.586e-1457.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SODGM1.252e-1345.45Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SERP51.635e-1359.26Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PROMH1.635e-1359.26Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPY2.789e-1357.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPS2.789e-1357.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPP2.789e-1357.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPN2.789e-1357.41Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-504 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504016 ID=CF504016; Name=CF504016; organism=Citrus sinensis; type=EST; length=323bp
GTTTGATTCACTTCTCTACTTGTGAAGTATATGGAAAGACCATTGGAAGC
TTTCTTCCTAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCT
TAAAGAAGATGCCTCCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGT
GGTCGTATGCATGTGCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAG
GGTGCAGAGAATGGTCTTGAGTTCACCATTGTGAGGCCCTTTAACTGGAT
TGGTCCGAGGATGGACTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTG
TTCCAAGGGTTCTGGCATGCTTT
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