CF504017

Overview
NameCF504017
Unique NameCF504017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504017 vs. ExPASy Swiss-Prot
Match: STC_RICCO (Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 1.351e-60
Identity = 109/128 (85.16%), Postives = 122/128 (95.31%), Query Frame = 2
Query:    2 DLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAKFGIDGNPGELPK 385
            DLV ASE S++VEHPW+NLLQ+KYRPHL+MA+ IPFFQQ TGINVIMFYAPVLF+TIGFGSDA+LMSAVITG+VNV ATMVSIYGVDKWGRRFLFLEGGVQMLICQA+VAACIGAKFG+DG PG+LP+
Sbjct:  259 DLVHASEDSKKVEHPWRNLLQRKYRPHLSMAIAIPFFQQLTGINVIMFYAPVLFDTIGFGSDAALMSAVITGLVNVFATMVSIYGVDKWGRRFLFLEGGVQMLICQAIVAACIGAKFGVDGAPGDLPQ 386          
BLAST of CF504017 vs. ExPASy Swiss-Prot
Match: STP1_ARATH (Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 3.010e-60
Identity = 108/128 (84.38%), Postives = 120/128 (93.75%), Query Frame = 2
Query:    2 DLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAKFGIDGNPGELPK 385
            DLVAAS+ S+ +EHPW+NLL++KYRPHLTMAV+IPFFQQ TGINVIMFYAPVLFNTIGF +DASLMSAV+TG VNV AT+VSIYGVD+WGRRFLFLEGG QMLICQAVVAACIGAKFG+DG PGELPK
Sbjct:  257 DLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGINVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAKFGVDGTPGELPK 384          
BLAST of CF504017 vs. ExPASy Swiss-Prot
Match: STP12_ARATH (Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 2.637e-56
Identity = 104/128 (81.25%), Postives = 115/128 (89.84%), Query Frame = 2
Query:    2 DLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAKFGIDGNPGELPK 385
            DL+ ASEAS+ VEHPW+NLLQ+KYRPHLTMA+LIP FQQ TGINVIMFYAPVLF TIGFGSDA+L+SAV+TG+VNV AT+VSIYGVDKWGRRFLFLEGG QMLI Q  VAA IGAKFG+DG PG LPK
Sbjct:  255 DLIIASEASKLVEHPWRNLLQRKYRPHLTMAILIPAFQQLTGINVIMFYAPVLFQTIGFGSDAALISAVVTGLVNVGATVVSIYGVDKWGRRFLFLEGGFQMLISQVAVAAAIGAKFGVDGTPGVLPK 382          
BLAST of CF504017 vs. ExPASy Swiss-Prot
Match: STP10_ARATH (Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.343e-43
Identity = 80/121 (66.12%), Postives = 100/121 (82.64%), Query Frame = 2
Query:    2 DLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAKFGIDG 364
            DL+ A EA+++VE+PWKN+++ KYRP L     IPFFQQ TGINVIMFYAPVLF T+GFG DA+LMSAVITG+VN+++T VSIY VD++GRR LFLEGG+QM ICQ +V + IGA+FG  G
Sbjct:  258 DLIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTLGFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIGARFGTSG 378          
BLAST of CF504017 vs. ExPASy Swiss-Prot
Match: STP11_ARATH (Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.075e-41
Identity = 79/121 (65.29%), Postives = 99/121 (81.82%), Query Frame = 2
Query:    2 DLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAKFGIDG 364
            +L  A EA+++V+HPW N++Q +YRP LT    IPFFQQ TGINVIMFYAPVLF TIGFG+DASL+SAVITG+VNV++T+VSIY VDK+GRR LFL+GG QM++ Q  V + IG KFG +G
Sbjct:  259 ELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGINVIMFYAPVLFKTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQMIVTQIAVGSMIGWKFGFNG 379          
BLAST of CF504017 vs. ExPASy Swiss-Prot
Match: STP4_ARATH (Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.553e-40
Identity = 74/121 (61.16%), Postives = 96/121 (79.34%), Query Frame = 2
Query:    2 DLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAKFGIDG 364
            DL+ ASE S+QV+HPWKN++  +YRP L M   IPFFQQ TGINVI FYAPVLF T+GFGS ASL+SA++TGI+ ++ T VS++ VD++GRR LFL+GG+QML+ Q  + A IG KFG+ G
Sbjct:  256 DLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLTGINVITFYAPVLFQTLGFGSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRILFLQGGIQMLVSQIAIGAMIGVKFGVAG 376          
BLAST of CF504017 vs. ExPASy Swiss-Prot
Match: STP9_ARATH (Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.459e-40
Identity = 80/123 (65.04%), Postives = 97/123 (78.86%), Query Frame = 2
Query:    2 DLVAASEASRQVEHPWKNLLQK-KYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAKFGIDGN 367
            DL  A EA+++V++PWKN+ Q+ KYRP L     IPFFQQ TGINVIMFYAPVLF T+GF  DASL+SAVITG VNVV+T+VSIY VD++GRR LFLEGG+QM++ Q VV   IG KFG  G+
Sbjct:  258 DLCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKTLGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGMKFGTTGS 380          
BLAST of CF504017 vs. ExPASy Swiss-Prot
Match: STP13_ARATH (Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.152e-35
Identity = 72/116 (62.07%), Postives = 91/116 (78.45%), Query Frame = 2
Query:    2 DLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAK 349
            DL+ AS  +++V+HP++NLLQ++ RP L +AV +  FQQ TGIN IMFYAPVLF+T+GFGSDASL SAV+TG VNV++T+VSIY VDK GRR L LE GVQM   Q V+A  +G K
Sbjct:  258 DLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMFFSQVVIAIILGVK 373          
BLAST of CF504017 vs. ExPASy Swiss-Prot
Match: STP7_ARATH (Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.408e-33
Identity = 65/118 (55.08%), Postives = 90/118 (76.27%), Query Frame = 2
Query:    2 DLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAKFG 355
            D+V ASE +  ++HP++N+LQK++RP L MA+ +P FQ  TGIN I+FYAPVLF T+GFG +ASL S+ +TG V V++T +SI  VD+ GRR L + GG+QM+ICQ +VA  +G KFG
Sbjct:  259 DMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQVIVAVILGVKFG 376          
BLAST of CF504017 vs. ExPASy Swiss-Prot
Match: HEX6_RICCO (Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.839e-33
Identity = 67/125 (53.60%), Postives = 91/125 (72.80%), Query Frame = 2
Query:    2 DLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAKFGIDGNPGE 376
            DL+ AS  SR ++HP+KN++++KYRP L MAV IPFFQQ TGINVI FYAP+LF TIG    ASL+S+++TG+V   +T +S+  VDK GRR LF+ GGVQM + Q +V + + A+ G  G  G+
Sbjct:  257 DLIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVTGINVIAFYAPILFRTIGLEESASLLSSIVTGLVGSASTFISMLIVDKLGRRALFIFGGVQMFVAQIMVGSIMAAELGDHGGIGK 381          
The following BLAST results are available for this feature:
BLAST of CF504017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
STC_RICCO1.351e-6085.16Sugar carrier protein C OS=Ricinus communis GN=STC... [more]
STP1_ARATH3.010e-6084.38Sugar transport protein 1 OS=Arabidopsis thaliana ... [more]
STP12_ARATH2.637e-5681.25Sugar transport protein 12 OS=Arabidopsis thaliana... [more]
STP10_ARATH3.343e-4366.12Sugar transport protein 10 OS=Arabidopsis thaliana... [more]
STP11_ARATH1.075e-4165.29Sugar transport protein 11 OS=Arabidopsis thaliana... [more]
STP4_ARATH1.553e-4061.16Sugar transport protein 4 OS=Arabidopsis thaliana ... [more]
STP9_ARATH3.459e-4065.04Sugar transport protein 9 OS=Arabidopsis thaliana ... [more]
STP13_ARATH1.152e-3562.07Sugar transport protein 13 OS=Arabidopsis thaliana... [more]
STP7_ARATH1.408e-3355.08Sugar transport protein 7 OS=Arabidopsis thaliana ... [more]
HEX6_RICCO1.839e-3353.60Hexose carrier protein HEX6 OS=Ricinus communis GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-505 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504017 ID=CF504017; Name=CF504017; organism=Citrus sinensis; type=EST; length=386bp
TGACCTTGTTGCAGCTAGTGAAGCATCTAGGCAAGTAGAACATCCTTGGA
AGAATTTGTTACAAAAGAAGTATAGGCCTCACCTCACAATGGCCGTTTTA
ATTCCCTTCTTCCAGCAGTTTACTGGCATTAATGTCATTATGTTTTACGC
CCCGGTTTTGTTCAACACAATTGGTTTCGGTAGTGATGCTTCACTCATGT
CTGCCGTGATCACTGGTATTGTCAATGTTGTTGCGACCATGGTATCAATA
TATGGTGTTGATAAGTGGGGACGAAGGTTTCTTTTCCTCGAAGGTGGTGT
TCAAATGTTAATATGCCAGGCTGTTGTTGCTGCTTGCATTGGTGCTAAAT
TTGGAATTGATGGGAATCCTGGGGAGCTGCCGAAGT
back to top