CF504021

Overview
NameCF504021
Unique NameCF504021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504021_ssr1 microsatellite CF504021_ssr1:1..14. BLAST: Citrus ESTs to Prunus persica proteins V1
CF504021_ssr557 microsatellite CF504021_ssr557:557..571. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig997 contig Csv1_Contig997:634..1340. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504021 vs. ExPASy Swiss-Prot
Match: TAP46_ARATH (PP2A regulatory subunit TAP46 OS=Arabidopsis thaliana GN=TAP46 PE=1 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 2.962e-66
Identity = 119/188 (63.30%), Postives = 139/188 (73.94%), Query Frame = 2 
Query:   95 LSAVKERQLKGGEEEFSEVVLDERSKKAESWHRDAAIRAQYTKPAQPITCATFAQDVLEGRAKVSQAHEHKHQPMIFGPASLVGGGLTSERERMAAQVFQPMHRLPTMSIEEAGLKEMEMMNKWQEMNVKLMEEANSAWYKDN-RKLGTSENXXXXXXXXAVQKARAFDDWKR**SSGSWQ*EATPCG 655
            LSA+KERQLK GE  FS   LD+R+KKAE+WHRDAA R QY+KPAQPITCATFAQDVLEGRA VSQ HEHK+QP+IFGPAS+VGG L++ERERM AQVFQP HR+PTM IE+AGL EM +MN WQE   K +EEA ++WY D   +    +         AV KARAFDDWK     G+   + TPCG
Sbjct:  218 LSAIKERQLKDGEGGFSRDALDDRTKKAETWHRDAAARIQYSKPAQPITCATFAQDVLEGRASVSQGHEHKNQPLIFGPASIVGGPLSTERERMIAQVFQPSHRMPTMCIEDAGLTEMNIMNDWQEQTKKAIEEATTSWYNDKPLRRKEEDEEDDDEDEEAVMKARAFDDWKDDNPRGAGNKKLTPCG 405

HSP 2 Score: 33.4982 bits (75), Expect = 2.962e-66
Identity = 13/18 (72.22%), Postives = 17/18 (94.44%), Query Frame = 1 
Query:    1 EREREAWLTTISLAVCKA 54
            E EREAWL++I+LA+CKA
Sbjct:  187 EEEREAWLSSINLAICKA 204
The following BLAST results are available for this feature:
BLAST of CF504021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TAP46_ARATH2.962e-6663.30PP2A regulatory subunit TAP46 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-509 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504021 ID=CF504021; Name=CF504021; organism=Citrus sinensis; type=EST; length=706bp
GAGAGAGAGAGAGAGGCTTGGCTTACCACCATCTCATTGGCTGTTTGCAA
GGCCCTTGATCTGCTAGAGATGCTGAAGAAAGAGGAAGATATGCCTTTCT
GCTGTAAAAGAAAGACAATTAAAGGGAGGTGAGGAGGAATTTTCTGAGGT
TGTCCTTGATGAGCGCTCCAAAAAAGCTGAATCTTGGCATCGTGATGCTG
CTATTCGAGCTCAATACACAAAACCAGCACAGCCCATCACATGTGCTACT
TTTGCACAGGATGTTCTAGAAGGAAGAGCCAAAGTCTCACAAGCACATGA
GCACAAACACCAGCCAATGATATTTGGACCAGCAAGTCTTGTTGGTGGAG
GCCTGACAAGTGAGAGGGAAAGGATGGCAGCGCAGGTCTTCCAACCTATG
CATAGGTTGCCGACCATGAGTATAGAGGAAGCTGGGCTGAAGGAGATGGA
AATGATGAATAAATGGCAGGAGATGAATGTTAAACTCATGGAAGAAGCCA
ATTCTGCTTGGTACAAGGACAATAGGAAATTGGGAACAAGTGAAAACGAC
GAAGAAGATGATGATGATGATGCTGTACAGAAGGCAAGAGCATTTGATGA
CTGGAAAAGATGATAATCCTCGGGGAGCTGGCAATAAGAAGCTACCCCAT
GTGGCTAAAAGATGCAATTACTTTCAATATGTTACATGTATTCTCCTAAC
ATGGAA
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