CF504022

Overview
NameCF504022
Unique NameCF504022
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length309
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11471 contig Csv1_Contig11471:279..587. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: BAS1_SPIOL (2-Cys peroxiredoxin BAS1, chloroplastic OS=Spinacia oleracea GN=BAS1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 7.874e-45
Identity = 87/102 (85.29%), Postives = 92/102 (90.20%), Query Frame = 1
Query:    4 SRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 309
            S SR+SF VKA  +  PLVGN APDF AEAVFDQEFI VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR++EFEKLNTE+LGVS DSVFSHLAWVQTD
Sbjct:   57 STSRRSFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTD 158          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: BAS1A_ARATH (2-Cys peroxiredoxin BAS1, chloroplastic OS=Arabidopsis thaliana GN=BAS1 PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 7.874e-45
Identity = 87/102 (85.29%), Postives = 92/102 (90.20%), Query Frame = 1
Query:    4 SRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 309
            S SR+SF VKA  +  PLVGN APDF AEAVFDQEFI VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR++EFEKLNTE+LGVS DSVFSHLAWVQTD
Sbjct:   57 STSRRSFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTD 158          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: BAS1B_ARATH (2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 2.291e-44
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = 1
Query:    4 SRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 309
            S SR++F VKA  +  PLVGN APDF AEAVFDQEFI VKLS+YIGKKYVILFFYPLDFTFVCPTEITAFSDRY EFEKLNTE+LGVS DSVFSHLAWVQTD
Sbjct:   62 SASRRNFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRYEEFEKLNTEVLGVSVDSVFSHLAWVQTD 163          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: BAS1_ORYSJ (2-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BAS1 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.308e-43
Identity = 88/103 (85.44%), Postives = 90/103 (87.38%), Query Frame = 1
Query:    4 SRSRKSFVVKAS-VEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 309
            S    SFV +A  V+  PLVGN APDF AEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRY EFEKLNTEILGVS DSVFSHLAWVQTD
Sbjct:   51 SARASSFVARAGGVDDAPLVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFEKLNTEILGVSIDSVFSHLAWVQTD 153          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: BAS1_WHEAT (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Triticum aestivum GN=TSA PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 4.320e-43
Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 1
Query:   16 KSFVVKASVEIP-PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 309
            +SFV +A+ E   PLVGN APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR+ EFEK+NTEILGVS DSVFSHLAWVQT+
Sbjct:    5 RSFVARAAAEYDLPLVGNKAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEKINTEILGVSVDSVFSHLAWVQTE 103          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: BAS1_HORVU (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Hordeum vulgare GN=BAS1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.320e-43
Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 1
Query:   16 KSFVVKASVEIP-PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 309
            +SFV +A+ E   PLVGN APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR+ EFEK+NTEILGVS DSVFSHLAWVQT+
Sbjct:    5 RSFVARAAAEYDLPLVGNKAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEKINTEILGVSVDSVFSHLAWVQTE 103          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: YCF42_PORPU (Putative peroxiredoxin ycf42 OS=Porphyra purpurea GN=ycf42 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.955e-31
Identity = 63/84 (75.00%), Postives = 73/84 (86.90%), Query Frame = 1
Query:   58 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 309
            VG  APDF+A AV+DQEF  +KLSD+   KYVILFFYPLDFTFVCPTEITAFSD+Y++F +LNTEILGVS DS +SHLAW+QTD
Sbjct:   10 VGQIAPDFSATAVYDQEFKTIKLSDF-KNKYVILFFYPLDFTFVCPTEITAFSDKYSDFSELNTEILGVSVDSEYSHLAWLQTD 92          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: YCF42_PORYE (Putative peroxiredoxin ycf42 OS=Porphyra yezoensis GN=ycf42 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 1
Query:   58 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 309
            VG  APDF+A AV+DQEF  +KLSD +  KY++LFFYPLDFTFVCPTEITAFSD+Y  F +LNTE+LGVS DS +SHLAW+QTD
Sbjct:   10 VGQLAPDFSATAVYDQEFKTLKLSD-LKNKYIVLFFYPLDFTFVCPTEITAFSDKYNAFSELNTEVLGVSVDSEYSHLAWLQTD 92          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: Y755_SYNY3 (Putative peroxiredoxin sll0755 OS=Synechocystis sp. (strain PCC 6803) GN=sll0755 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.142e-27
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 1
Query:   58 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 309
            VG  APDF A A+ DQ F  VKLS Y GK Y++LFFYPLDFTFVCPTEI AFSDR++EF  L+TE++G+S DS FSHLAW+QT+
Sbjct:    7 VGQPAPDFTATAIVDQSFQTVKLSTYRGK-YLVLFFYPLDFTFVCPTEIIAFSDRHSEFTALDTEVVGISVDSEFSHLAWIQTE 89          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: PRDX2_BOVIN (Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.669e-27
Identity = 59/83 (71.08%), Postives = 64/83 (77.11%), Query Frame = 1
Query:   58 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            VG  AP+F A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFSDR  EF KLN E+LGVS DS F+HLAW+ T
Sbjct:    9 VGKPAPEFQATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIVAFSDRAAEFHKLNCEVLGVSVDSQFTHLAWINT 90          
The following BLAST results are available for this feature:
BLAST of CF504022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
BAS1_SPIOL7.874e-4585.292-Cys peroxiredoxin BAS1, chloroplastic OS=Spinaci... [more]
BAS1A_ARATH7.874e-4585.292-Cys peroxiredoxin BAS1, chloroplastic OS=Arabido... [more]
BAS1B_ARATH2.291e-4484.312-Cys peroxiredoxin BAS1-like, chloroplastic OS=Ar... [more]
BAS1_ORYSJ3.308e-4385.442-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza s... [more]
BAS1_WHEAT4.320e-4385.862-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
BAS1_HORVU4.320e-4385.862-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
YCF42_PORPU4.955e-3175.00Putative peroxiredoxin ycf42 OS=Porphyra purpurea ... [more]
YCF42_PORYE7.154e-3071.43Putative peroxiredoxin ycf42 OS=Porphyra yezoensis... [more]
Y755_SYNY31.142e-2767.86Putative peroxiredoxin sll0755 OS=Synechocystis sp... [more]
PRDX2_BOVIN5.669e-2771.08Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-510 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504022 ID=CF504022; Name=CF504022; organism=Citrus sinensis; type=EST; length=309bp
GGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGTTGAAATACC
ACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGGCTGTTTTCG
ATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGGAAGAAATAT
GTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTGCCCCACAGA
AATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGCTAAACACAG
AGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTGGCATGGGTC
CAAACAGAC
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