CF504023

Overview
NameCF504023
Unique NameCF504023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length428
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504023 vs. ExPASy Swiss-Prot
Match: LAX1_ORYSJ (Auxin transporter-like protein 1 OS=Oryza sativa subsp. japonica GN=Os01g0856500 PE=2 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 1.270e-69
Identity = 122/142 (85.92%), Postives = 134/142 (94.37%), Query Frame = 2
Query:    2 LVPNRHEGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICLRALARL 427
            L+  + EG+TH+GP+ LVLYFTGATNILYTFGGHAVTVEIMHAMWKP KFK IYLLATLYVFTLT+PSA+A+YWAFGD+LLTHSNAFSLLP++ WRD AVILMLIHQFITFGFACTPLYFVWEKV+GMHDTKSICLRALARL
Sbjct:  224 LLNGQAEGITHTGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPSASAMYWAFGDELLTHSNAFSLLPKTGWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARL 365          
BLAST of CF504023 vs. ExPASy Swiss-Prot
Match: AUX1_ARATH (Auxin transporter protein 1 OS=Arabidopsis thaliana GN=AUX1 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 1.270e-69
Identity = 123/142 (86.62%), Postives = 132/142 (92.96%), Query Frame = 2
Query:    2 LVPNRHEGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICLRALARL 427
            ++  + EGV HSGP+ LVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK IYL+ATLYVFTLTIPSAAAVYWAFGD LL HSNAFSL+P++ WRD AVILMLIHQFITFGFACTPLYFVWEKV+GMHDTKSICLRALARL
Sbjct:  216 IIHGQAEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLMATLYVFTLTIPSAAAVYWAFGDALLDHSNAFSLMPKNAWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARL 357          
BLAST of CF504023 vs. ExPASy Swiss-Prot
Match: LAX2_MEDTR (Auxin transporter-like protein 2 OS=Medicago truncatula GN=LAX2 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 1.075e-68
Identity = 122/142 (85.92%), Postives = 131/142 (92.25%), Query Frame = 2
Query:    2 LVPNRHEGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICLRALARL 427
            +V  + E VTH+GP  LVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK IYL+ATLYVFTLTIPSA AVYWAFGD+LL HSNAFSLLP++ WRD AVILMLIHQFITFGFACTPLYFVWEKV+GMHDT+SICLRALARL
Sbjct:  216 IVHGQAENVTHTGPKKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLMATLYVFTLTIPSATAVYWAFGDELLNHSNAFSLLPKNGWRDGAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTRSICLRALARL 357          
BLAST of CF504023 vs. ExPASy Swiss-Prot
Match: LAX1_ARATH (Auxin transporter-like protein 1 OS=Arabidopsis thaliana GN=LAX1 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 2.395e-68
Identity = 120/136 (88.24%), Postives = 130/136 (95.59%), Query Frame = 2
Query:   20 EGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICLRALARL 427
            EGVTHSGP+ LVLYFTGATNILYTFGGHAVTVEIMHAMWKP+KFKSIYL+ATLYVFTLT+PSA+AVYWAFGDQLL HSNAFSLLP++R+RD AVILMLIHQFITFGFACTPLYFVWEK +GMH TKS+CLRAL RL
Sbjct:  228 EGVTHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPRKFKSIYLMATLYVFTLTLPSASAVYWAFGDQLLNHSNAFSLLPKTRFRDTAVILMLIHQFITFGFACTPLYFVWEKAIGMHHTKSLCLRALVRL 363          
BLAST of CF504023 vs. ExPASy Swiss-Prot
Match: LAX4_MEDTR (Auxin transporter-like protein 4 OS=Medicago truncatula GN=LAX4 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 2.648e-67
Identity = 121/142 (85.21%), Postives = 129/142 (90.85%), Query Frame = 2
Query:    2 LVPNRHEGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICLRALARL 427
            +V  + E V HSGP+ LVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK IY LATLYVFTLTIPSA AVYWAFGD+LL HSNAFSLLP++ +RD AVILMLIHQFITFGFACTPLYFVWEKV+GMHDTKSICLRAL RL
Sbjct:  216 IVNGQIENVVHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYFLATLYVFTLTIPSAVAVYWAFGDELLNHSNAFSLLPKNGFRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALVRL 357          
BLAST of CF504023 vs. ExPASy Swiss-Prot
Match: LAX2_ORYSJ (Auxin transporter-like protein 2 OS=Oryza sativa subsp. japonica GN=Os05g0447200 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 7.705e-67
Identity = 118/136 (86.76%), Postives = 127/136 (93.38%), Query Frame = 2
Query:   20 EGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICLRALARL 427
            +GVTHSGPS +VLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK IYL+ATLYVFTLT+PSA+A+YWAFGD LLTHSNAFSLLPRS WRD AVILMLIHQFITFGFACTPLYFVWEK +GMH T+S+  RALARL
Sbjct:  221 DGVTHSGPSKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLVATLYVFTLTLPSASAMYWAFGDALLTHSNAFSLLPRSGWRDAAVILMLIHQFITFGFACTPLYFVWEKAIGMHGTRSVLTRALARL 356          
BLAST of CF504023 vs. ExPASy Swiss-Prot
Match: LAX1_MEDTR (Auxin transporter-like protein 1 OS=Medicago truncatula GN=LAX1 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 2.242e-66
Identity = 119/142 (83.80%), Postives = 126/142 (88.73%), Query Frame = 2
Query:    2 LVPNRHEGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICLRALARL 427
            +V  + E V HSGP  +V YFTGATNILYTFGGHAVTVEIMHAMWKPQKFK+IY  ATLYVFTLT+PSA AVYWAFGDQLL HSNAFSLLPR+ WRD  VILMLIHQFITFGFACTPLYFVWEKV+GMHDTKSI LRALARL
Sbjct:  215 IVHGQVENVVHSGPKKMVWYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYFFATLYVFTLTLPSAIAVYWAFGDQLLDHSNAFSLLPRNAWRDAGVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSIFLRALARL 356          
BLAST of CF504023 vs. ExPASy Swiss-Prot
Match: LAX5_MEDTR (Auxin transporter-like protein 5 OS=Medicago truncatula GN=LAX5 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 7.212e-65
Identity = 115/136 (84.56%), Postives = 125/136 (91.91%), Query Frame = 2
Query:   20 EGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICLRALARL 427
            EGV HSGP+ ++LYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK+IYLLATLYV TLTIPSA AVYWAFGD LL HSNAF+LLP+S +RD+AVILMLIHQFITFGFACTPLYFVWEK VGMH+ KS+C RAL RL
Sbjct:  218 EGVKHSGPNKIILYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATLYVLTLTIPSATAVYWAFGDMLLNHSNAFALLPKSPFRDMAVILMLIHQFITFGFACTPLYFVWEKTVGMHECKSLCKRALVRL 353          
BLAST of CF504023 vs. ExPASy Swiss-Prot
Match: LAX2_ARATH (Auxin transporter-like protein 2 OS=Arabidopsis thaliana GN=LAX2 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 6.105e-64
Identity = 113/136 (83.09%), Postives = 125/136 (91.91%), Query Frame = 2
Query:   20 EGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICLRALARL 427
            EGV HSGPS LVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYL ATLYV TLT+PSA+AVYWAFGD LL HSNAF+LLP++ +RD AV+LMLIHQFITFGFACTPLYFVWEK++GMH+ +S+C RA ARL
Sbjct:  216 EGVKHSGPSKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLFATLYVLTLTLPSASAVYWAFGDLLLNHSNAFALLPKNLYRDFAVVLMLIHQFITFGFACTPLYFVWEKLIGMHECRSMCKRAAARL 351          
BLAST of CF504023 vs. ExPASy Swiss-Prot
Match: LAX3_ORYSJ (Auxin transporter-like protein 3 OS=Oryza sativa subsp. japonica GN=Os10g0147400 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 1.041e-63
Identity = 111/142 (78.17%), Postives = 127/142 (89.44%), Query Frame = 2
Query:    2 LVPNRHEGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICLRALARL 427
            L+  + EGV HSGP+++VLYFTGATNILYTFGGHAVTVEIMHAMW+PQKFK+IYLLAT+YV TLT+PSA+A YWAFGD LLTHSNA +LLPR+ WRD AV+LMLIHQFITFGFACTPLYFVWEK+VG+H   S+C RA ARL
Sbjct:  231 LIHGQVEGVAHSGPTSIVLYFTGATNILYTFGGHAVTVEIMHAMWRPQKFKAIYLLATVYVLTLTLPSASAAYWAFGDALLTHSNALALLPRTPWRDAAVVLMLIHQFITFGFACTPLYFVWEKLVGLHGCPSLCKRAAARL 372          
The following BLAST results are available for this feature:
BLAST of CF504023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
LAX1_ORYSJ1.270e-6985.92Auxin transporter-like protein 1 OS=Oryza sativa s... [more]
AUX1_ARATH1.270e-6986.62Auxin transporter protein 1 OS=Arabidopsis thalian... [more]
LAX2_MEDTR1.075e-6885.92Auxin transporter-like protein 2 OS=Medicago trunc... [more]
LAX1_ARATH2.395e-6888.24Auxin transporter-like protein 1 OS=Arabidopsis th... [more]
LAX4_MEDTR2.648e-6785.21Auxin transporter-like protein 4 OS=Medicago trunc... [more]
LAX2_ORYSJ7.705e-6786.76Auxin transporter-like protein 2 OS=Oryza sativa s... [more]
LAX1_MEDTR2.242e-6683.80Auxin transporter-like protein 1 OS=Medicago trunc... [more]
LAX5_MEDTR7.212e-6584.56Auxin transporter-like protein 5 OS=Medicago trunc... [more]
LAX2_ARATH6.105e-6483.09Auxin transporter-like protein 2 OS=Arabidopsis th... [more]
LAX3_ORYSJ1.041e-6378.17Auxin transporter-like protein 3 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-511 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504023 ID=CF504023; Name=CF504023; organism=Citrus sinensis; type=EST; length=428bp
CCTCGTGCCGAATCGGCACGAGGGTGTGACTCACTCAGGCCCAAGCACGT
TGGTTTTGTACTTCACCGGCGCCACCAATATACTCTATACTTTTGGCGGA
CATGCAGTGACTGTAGAAATTATGCATGCTATGTGGAAGCCACAGAAATT
CAAGTCCATATATCTTCTTGCCACCCTGTATGTGTTCACTCTAACCATTC
CTTCTGCTGCCGCTGTTTACTGGGCTTTTGGTGATCAACTCCTCACACAT
TCAAATGCCTTCTCACTGCTTCCACGAAGTCGATGGCGTGATGTTGCAGT
AATCCTAATGCTTATTCACCAGTTCATAACATTTGGCTTTGCATGCACTC
CACTATATTTTGTGTGGGAGAAAGTGGTGGGAATGCATGATACAAAGAGC
ATATGTTTGAGGGCACTTGCCCGGTTGC
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