CF504026

Overview
NameCF504026
Unique NameCF504026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length316
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2210 contig Csv1_Contig2210:121..436. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504026 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.872e-21
Identity = 55/106 (51.89%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:    1 ITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQE--SKTNVGXXXXXXXXXXXXXXXXXXXXLVDERMSTEGTGLPFGLSNNLLGWIL 312
            ITAS   S + R+ LVH   +  SSSP+LGLP+M  + KV CS+E KPS  E  + TN                      LVDERMSTEGTGLPFGLSNNLLGWIL
Sbjct:    4 ITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWIL 109
[Close]
BLAST of CF504026 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.838e-16
Identity = 56/105 (53.33%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:    4 TASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVK-GKVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXX-LVDERMSTEGTGLPFGLSNNLLGWIL 312
            TAS  T S  R  L+ KP+ VA S+PVLGLP M  K G VRCSME   +KQ + + +G                     LVDERMSTEGTGLPFGLSNNLLGWIL
Sbjct:    5 TASASTVSAARPALLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWIL 105
The following BLAST results are available for this feature:
BLAST of CF504026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PSBW_SPIOL7.872e-2151.89Photosystem II reaction center W protein, chloropl... [more]
PSBW_ARATH5.838e-1653.33Photosystem II reaction center W protein, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-514 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504026 ID=CF504026; Name=CF504026; organism=Citrus sinensis; type=EST; length=316bp
ATCACTGCTAGCGTAGGAACATCATCGATTACACGCTCGGTTCTTGTGCA
CAAGCCATCCATTGTAGCTTCATCATCCCCTGTTCTTGGATTGCCAGCAA
TGGCAGTGAAGGGGAAAGTGAGATGTTCCATGGAGGAAAAGCCTTCAAAG
CAAGAGAGCAAAACAAACGTGGGAATGAGTGCGTCACTGCTAGCAGCAGC
ATGCGCAGCAACAATGTCAAGCCCAGCCATGGCTCTTGTTGATGAGAGAA
TGAGCACTGAAGGAACAGGGCTTCCATTTGGTTTGAGCAACAACCTCCTT
GGGTGGATTCTGTTGG
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