CF504029

Overview
NameCF504029
Unique NameCF504029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:3..446. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.517e-64
Identity = 112/122 (91.80%), Postives = 120/122 (98.36%), Query Frame = 3 
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKIQ 419
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLIL++RNRLKYALTYREVI+ILMQRHVLVDGKVRTDKTYPAGFMDV+SIPKTNEN+RLLYDTKGRFRLH +RDE+AK +
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTNENYRLLYDTKGRFRLHPIRDEDAKFK 122

HSP 2 Score: 26.1794 bits (56), Expect = 3.517e-64
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 
Query:  412 KFKLCKVRSVQ 444
            KFKLCKVRSVQ
Sbjct:  120 KFKLCKVRSVQ 130
[Close]
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 3.518e-64
Identity = 112/122 (91.80%), Postives = 120/122 (98.36%), Query Frame = 3 
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKIQ 419
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+L++RNRLKYALTYREVI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK +
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFK 122

HSP 2 Score: 25.7942 bits (55), Expect = 3.518e-64
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 1 
Query:  412 KFKLCKVRSVQ 444
            KFKLCKVRS+Q
Sbjct:  120 KFKLCKVRSIQ 130
[Close]
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 239.195 bits (609), Expect = 3.518e-64
Identity = 112/122 (91.80%), Postives = 120/122 (98.36%), Query Frame = 3 
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKIQ 419
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+L++RNRLKYALTYREVI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK +
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFK 122

HSP 2 Score: 25.7942 bits (55), Expect = 3.518e-64
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 1 
Query:  412 KFKLCKVRSVQ 444
            KFKLCKVRS+Q
Sbjct:  120 KFKLCKVRSIQ 130
[Close]
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 3.518e-64
Identity = 112/122 (91.80%), Postives = 120/122 (98.36%), Query Frame = 3 
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKIQ 419
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+L++RNRLKYALTYREVI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK +
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFK 122

HSP 2 Score: 25.7942 bits (55), Expect = 3.518e-64
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 1 
Query:  412 KFKLCKVRSVQ 444
            KFKLCKVRS+Q
Sbjct:  120 KFKLCKVRSIQ 130
[Close]
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.980e-64
Identity = 112/122 (91.80%), Postives = 120/122 (98.36%), Query Frame = 3 
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKIQ 419
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++++RNRLKYALTYREVI+ILMQR V+VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEE+K +
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESKFK 122

HSP 2 Score: 26.1794 bits (56), Expect = 5.980e-64
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 
Query:  412 KFKLCKVRSVQ 444
            KFKLCKVRSVQ
Sbjct:  120 KFKLCKVRSVQ 130
[Close]
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 233.802 bits (595), Expect = 1.108e-62
Identity = 110/122 (90.16%), Postives = 119/122 (97.54%), Query Frame = 3 
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKIQ 419
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLIL++RNRLKYALTYREVI+ILMQRHVLVDGKVRTDKTYPAGFMDV+SIPKT EN+RLLYDTKGRFRL S++DE+AK +
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFK 122

HSP 2 Score: 26.1794 bits (56), Expect = 1.108e-62
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 
Query:  412 KFKLCKVRSVQ 444
            KFKLCKVRSVQ
Sbjct:  120 KFKLCKVRSVQ 130
[Close]
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 2.053e-61
Identity = 109/122 (89.34%), Postives = 117/122 (95.90%), Query Frame = 3 
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKIQ 419
            MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLIL+LRNRLKYALTYREVIAILMQRHV+VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRF LH++  +E K +
Sbjct:    1 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETKFK 122

HSP 2 Score: 26.1794 bits (56), Expect = 2.053e-61
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 
Query:  412 KFKLCKVRSVQ 444
            KFKLCKVRSVQ
Sbjct:  120 KFKLCKVRSVQ 130
[Close]
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.954e-56
Identity = 102/122 (83.61%), Postives = 111/122 (90.98%), Query Frame = 3 
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKIQ 419
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLIL+LRNRLKYALTYREV++ILMQRH+LVDGK+     +     DVVSIPKTNENFRLLYDTKGRFRLHS+RDEE+K +
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVVSILMQRHILVDGKIH----FCIRLSDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESKFK 118

HSP 2 Score: 26.1794 bits (56), Expect = 6.954e-56
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 
Query:  412 KFKLCKVRSVQ 444
            KFKLCKVRSVQ
Sbjct:  116 KFKLCKVRSVQ 126
[Close]
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.508e-47
Identity = 90/120 (75.00%), Postives = 101/120 (84.17%), Query Frame = 3 
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAK 413
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV+ I+ QR + VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H +  EEAK
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 120
[Close]
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4_SPOFR (40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.969e-47
Identity = 90/120 (75.00%), Postives = 101/120 (84.17%), Query Frame = 3 
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAK 413
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV+ I+ QR + VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H +  EEAK
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTVHRITPEEAK 120
The following BLAST results are available for this feature:
BLAST of CF504029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RS4_MAIZE3.517e-6491.8040S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ... [more]
RS43_ARATH3.518e-6491.8040S ribosomal protein S4-3 OS=Arabidopsis thaliana... [more]
RS42_ARATH3.518e-6491.8040S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS41_ARATH3.518e-6491.8040S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS4_SOLTU5.980e-6491.8040S ribosomal protein S4 OS=Solanum tuberosum GN=R... [more]
RS4_ORYSJ1.108e-6290.1640S ribosomal protein S4 OS=Oryza sativa subsp. ja... [more]
RS4_GOSHI2.053e-6189.3440S ribosomal protein S4 OS=Gossypium hirsutum GN=... [more]
RS4_PRUAR6.954e-5683.6140S ribosomal protein S4 OS=Prunus armeniaca GN=RP... [more]
RS4_BOMMO1.508e-4775.0040S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE... [more]
RS4_SPOFR1.969e-4775.0040S ribosomal protein S4 OS=Spodoptera frugiperda ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-517 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504029 ID=CF504029; Name=CF504029; organism=Citrus sinensis; type=EST; length=445bp
CAAAGAGAACAGACAAGCAGCCGCAGCGAGGCAGCAGCTTCAAACTCACA
AAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAATGCCCCTAA
GCACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAAGCCATCAT
CTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTGTATTGCGA
AACCGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGCTATTCTGAT
GCAACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAAGACCTACC
CTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACGAGAACTTC
CGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCCCTCAGAGA
TGAGGAGGCAAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGT
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