CF504032
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF504032 vs. ExPASy Swiss-Prot
Match: RR17_ARATH (30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana GN=RPS17 PE=1 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 6.748e-35 Identity = 83/142 (58.45%), Postives = 99/142 (69.72%), Query Frame = 1 Query: 1 KLSSPKTRFLNGSTPLTRLSKPPSTPQNLPYSSFPQIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKAAGESSNAGNNELGIPSESEQ 426 KLSSP F +GSTPL+ LSKP S P + + P I+AMK MQGRVVCA+SDKTVAVEVVRL PHP QAHDP+NQF+VGD+V+LEKSRPISKTKSF+A+ + R A K AG G+ LG+P ES+Q Sbjct: 14 KLSSP---FAHGSTPLSSLSKPNSFPNHRMPALVPVIRAMKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIARAARKAEAG-----GDELLGLPLESQQ 147
BLAST of CF504032 vs. ExPASy Swiss-Prot
Match: RR17_PEA (30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum GN=RPS17 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 7.990e-28 Identity = 71/138 (51.45%), Postives = 85/138 (61.59%), Query Frame = 1 Query: 25 FLNGSTPLTRLSKPPSTPQNLPYSS---FPQIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKAAGESSNAGNNELGIPSESEQQ 429 F L R S P S+PQ + FP IKAMK M+G+VVCAS +KTVAVEV RL PHP QAHDPEN F+VGD+VQL K+RPISK K+F+AV P R + K AG S ELGIP +S+Q+ Sbjct: 4 FTGNGIGLNRFSNPISSPQTQTQTRSLPFPAIKAMKTMEGKVVCASGNKTVAVEVTRLAPHPKYQKRIRLKKKYQAHDPENDFKVGDIVQLLKTRPISKKKTFLAVPAPSRKSKK--AGSS-----GELGIPLQSQQE 134
BLAST of CF504032 vs. ExPASy Swiss-Prot
Match: RR17_MAIZE (30S ribosomal protein S17, chloroplastic OS=Zea mays GN=RPS17 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 8.556e-22 Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 1 Query: 37 STPLTRLSKPPSTPQNLPYSSFPQIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKA 366 S+P +S PP + +I+A +++ GRVV +DKTV VEVVRL PHP QAHDP+NQF+VGD+V+L+ SRPISKTK F+A+ +PPR+ +K+ Sbjct: 5 SSPFVSVSPPPPPLSSHGARPALRIEAARQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVELQPSRPISKTKHFLAIPLPPRDTRRKS 114
BLAST of CF504032 vs. ExPASy Swiss-Prot
Match: RR17_ORYSJ (30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica GN=RPS17 PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.246e-21 Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 1 Query: 106 QIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKA 366 +I+A K++ GRVV +DKTV VEVVRL PHP QAHDP+NQF+VGD+V+L +SRPISKTK F+AV +PPR+ +K+ Sbjct: 33 RIQAAKQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVELRRSRPISKTKHFLAVPLPPRDTRRKS 119 The following BLAST results are available for this feature:
BLAST of CF504032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF504032 ID=CF504032; Name=CF504032; organism=Citrus sinensis; type=EST; length=549bpback to top |