CF504051

Overview
NameCF504051
Unique NameCF504051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1707 contig Csv1_Contig1707:26..537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504051 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 8.735e-36
Identity = 79/140 (56.43%), Postives = 96/140 (68.57%), Query Frame = 2
Query:   86 METERKKQE---LRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAESNTF 496
            METE+K  +   L+HL F+RIA I  L  VS+LY+YAK+NSGPL+S V  VE AVT VV PVYQKFK VP            E S KFDEHAPP+AK+V +Q H LI  A++KAQ+ V EA+TGGP+AA +YAA E   F
Sbjct:    1 METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPKAAFNYAATEYKFF 140          
BLAST of CF504051 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.687e-18
Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = 2
Query:  101 KKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGG 451
            +++ L++L F+++AAI  +VC SSLY+YAK NSGPL+  V TVE  V  V+GPVY+KF  VP             +  + + H P L KR + Q  ++ + A + A  + SE Q  G
Sbjct:   16 EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPG 132          
BLAST of CF504051 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.311e-15
Identity = 52/146 (35.62%), Postives = 79/146 (54.11%), Query Frame = 2
Query:   74 RSEDMETERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXEASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQNLVSEAQTGGPRAAVHYAAAE 484
            ++ +ME   +++ LR+L F++ AA Q LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP            E+ ++ D   PP       LA+  A++V    L+ TA+  A++ ++ A+   PRA   Y   E
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYE 164          
BLAST of CF504051 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.311e-15
Identity = 52/146 (35.62%), Postives = 79/146 (54.11%), Query Frame = 2
Query:   74 RSEDMETERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXEASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQNLVSEAQTGGPRAAVHYAAAE 484
            ++ +ME   +++ LR+L F++ AA Q LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP            E+ ++ D   PP       LA+  A++V    L+ TA+  A++ ++ A+   PRA   Y   E
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYE 164          
BLAST of CF504051 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.450e-14
Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = 2
Query:   92 TERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGG 451
            T+ +K+ L++L F++ AA++AL+  + +Y  AK  SGPL+  V +VE AV  VVGPVY+K+  VP             +  + D   PP+ K+V++Q  S  + A   A+ L SE +  G
Sbjct:   15 TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAG 134          
The following BLAST results are available for this feature:
BLAST of CF504051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y1736_ARATH8.735e-3656.43REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
SRP_VITRI3.687e-1839.32Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y5513_ORYSJ1.311e-1535.62REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI1.311e-1535.62REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
Y3550_ARATH1.450e-1435.83REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-539 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504051 ID=CF504051; Name=CF504051; organism=Citrus sinensis; type=EST; length=511bp
ATTGAACGCTGCAATCAATAGCAAACTAATTTCTCGCGAGATCTAAAAGC
AATATCGAATAATTCATCTTTTGCGCAGTGAAGATATGGAGACTGAGAGG
AAGAAACAGGAACTGAGGCATCTTGGATTTATGAGGATAGCCGCGATTCA
GGCTCTGGTGTGCGTGTCGAGTTTGTACGACTACGCAAAACGCAACTCGG
GGCCGCTACGCTCACCGGTTGGGACTGTCGAAAGCGCCGTGACTGCCGTC
GTGGGACCTGTTTATCAGAAATTCAAGGGCGTGCCTGATGATCTCCTCGT
TTTTCTTGATAAGAAGGTGGATGAGGCTTCACGCAAGTTTGACGAGCACG
CTCCCCCTTTGGCCAAGCGGGTTGCCAGCCAAGTACATAGTCTAATTGAA
ACAGCATCACAGAAAGCTCAAAATCTTGTGAGTGAGGCCCAAACCGGGGG
GCCTCGAGCAGCTGTCCATTATGCTGCTGCTGAGTCTAACACCTTCTGGT
AACAAATTCCG
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