CF504057

Overview
NameCF504057
Unique NameCF504057
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length446
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504057 vs. ExPASy Swiss-Prot
Match: CAF1M_ARATH (CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana GN=At4g31010 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 7.374e-66
Identity = 114/148 (77.03%), Postives = 130/148 (87.84%), Query Frame = 1
Query:    1 REWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPH 444
            REWTGVCAPA +PKV+S + G EDP LEEKR  VRE+IQG  LT AERK LVE C RN+TKRQ+NLGRDGLTHNMLND++NHWKHAEAVR+KCLGVPT+DMKNV F LEDKTFG+++ +H GTLVLYRGRNY+PKKRP IPLMLW+PH
Sbjct:  118 REWTGVCAPAVNPKVESVD-GVEDPKLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNYDPKKRPKIPLMLWKPH 264          
BLAST of CF504057 vs. ExPASy Swiss-Prot
Match: CAF1M_ORYSJ (CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0174900 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 7.391e-58
Identity = 108/153 (70.59%), Postives = 122/153 (79.74%), Query Frame = 1
Query:    1 REWTGVCAPAADPKVKSAEEGAEDP------NLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRP 441
            R WTG+CAPA D  ++ A   A+DP       LEE R   RER+ GEPLT AER  LV KC ++RTK+QINLGRDGLTHNMLNDIHNHWK+ EAVR+KCLGVPTVDM+NVC QLEDKT G II RHGG L+LYRGR+YNPKKRPVIPLMLW+P
Sbjct:  111 RPWTGLCAPAVDTTLRDAH--ADDPAPAAERELEEARRRERERVLGEPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLILYRGRHYNPKKRPVIPLMLWKP 261          
BLAST of CF504057 vs. ExPASy Swiss-Prot
Match: CAF2M_ARATH (CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana GN=At5g54890 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.654e-41
Identity = 81/148 (54.73%), Postives = 104/148 (70.27%), Query Frame = 1
Query:    1 REWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPH 444
            R+WTG  A  A P++  ++   E           R R+ GE LT  E   L+E+   +   RQINLG+ G+THNM++DIHNHWK AEAVRIKCLGVPT+DM N+CF LE+K+ GKI++R+   LVLYRGRNY+PK RP+IPLMLW+PH
Sbjct:  113 RKWTGTTA-LASPEIDQSQWVEE-----------RARVLGETLTEDEVTELIERYRHSDCTRQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYRGRNYDPKSRPIIPLMLWKPH 248          
BLAST of CF504057 vs. ExPASy Swiss-Prot
Match: CAF2M_ORYSJ (CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0188000 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 2.822e-41
Identity = 82/147 (55.78%), Postives = 100/147 (68.03%), Query Frame = 1
Query:    1 REWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRP 441
            R W GV A AA  +   A   +            RE + GEPL   E   LVE+   +   RQINLG+ G+THNM++DIHNHWK AEAVRIKCLGVPT+DM N+CF LEDKT GK+I+R+   L+LYRGRNY+PK+RP IPLMLW+P
Sbjct:  115 RPWDGVAAAAARGEGAGAAATS------------REEVLGEPLAEEEVAQLVERYRHSDCSRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILYRGRNYDPKQRPQIPLMLWKP 249          
BLAST of CF504057 vs. ExPASy Swiss-Prot
Match: CAF1P_ARATH (CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana GN=At2g20020 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 1.959e-34
Identity = 69/123 (56.10%), Postives = 86/123 (69.92%), Query Frame = 1
Query:   73 PNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRP 441
            P +  + +  +E I GEPLT  E + LV  C +  T RQ+N+GRDGLTHNMLN+IH+ WK     +IKC GV TVDM NVC QLE+K  GK+I+R GG L L+RGRNYN + RP  PLMLW+P
Sbjct:  225 PGVGPRYVYSKEEILGEPLTKEEVRELVTSCLK--TTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLFRGRNYNHRTRPRFPLMLWKP 345          
BLAST of CF504057 vs. ExPASy Swiss-Prot
Match: CAF2P_ORYSJ (CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0323300 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.363e-34
Identity = 68/113 (60.18%), Postives = 85/113 (75.22%), Query Frame = 1
Query:  103 RERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRP 441
            RE + GEPLT AE + LV K H +   RQ+N+GRDGLTHNML  IH HW+  E  +++C GVPTVDMKN+C+ LE+K+ GK+I R GG + LYRGRNYNP+ RP  PLMLW+P
Sbjct:  222 REEVLGEPLTAAEVRDLV-KPHISHN-RQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRNYNPRTRPRYPLMLWKP 332          
BLAST of CF504057 vs. ExPASy Swiss-Prot
Match: CAF2P_MAIZE (CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.270e-33
Identity = 67/113 (59.29%), Postives = 86/113 (76.11%), Query Frame = 1
Query:  103 RERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRP 441
            RE + GEPLT +E +ALV K H +   RQ+N+GRDGLTHNML  IH HW+  E  +++C GVPTVDMKN+C+ LE+K+ GK+I R GG + LYRGR+Y+PK RP  PLMLW+P
Sbjct:  226 REEVLGEPLTPSEVRALV-KPHISHN-RQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRHYDPKTRPRYPLMLWKP 336          
BLAST of CF504057 vs. ExPASy Swiss-Prot
Match: CAF1P_ORYSJ (CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0495900 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.828e-33
Identity = 66/113 (58.41%), Postives = 81/113 (71.68%), Query Frame = 1
Query:  103 RERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRP 441
            RE + GEPLT  E   LV+   +  TKRQ+N+GRDGLTHNML +IH+HWK     +IKC GV TVDM NVC QLE+K  GK+I   GG + L+RGRNYN + RP+ PLMLW+P
Sbjct:  177 REEVLGEPLTKEEVDELVKATLK--TKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQGGVIFLFRGRNYNYRTRPIYPLMLWKP 287          
BLAST of CF504057 vs. ExPASy Swiss-Prot
Match: CAF1P_MAIZE (CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 6.301e-33
Identity = 65/113 (57.52%), Postives = 81/113 (71.68%), Query Frame = 1
Query:  103 RERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRP 441
            RE I GEPLT  E   LV+   ++  KRQ+N+GRDGLTHNML +IH+HWK     +IKC GV T+DM N+C QLE+K  GK+I R GG + L+RGRNYN + RP  PLMLW+P
Sbjct:  177 REDILGEPLTKEEVSELVKGSLKS--KRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNICHQLEEKVGGKVIHRQGGVIFLFRGRNYNYRTRPCFPLMLWKP 287          
BLAST of CF504057 vs. ExPASy Swiss-Prot
Match: CAF2P_ARATH (CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana GN=At1g23400 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.314e-30
Identity = 64/114 (56.14%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  103 RERIQGEPLTNAERKALVEK-CHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRP 441
            RE + GEPL   E+  L++   H NR   Q+NLGRDG THNML  IH+HWK     +++C GVPTVDM NVC  LE+KT G+II R GG + L+RGRNYN + RP  PLMLW+P
Sbjct:  195 REEVLGEPLKRWEKGMLIKPHMHDNR---QVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLFRGRNYNYRTRPQYPLMLWKP 305          
The following BLAST results are available for this feature:
BLAST of CF504057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CAF1M_ARATH7.374e-6677.03CRS2-associated factor 1, mitochondrial OS=Arabido... [more]
CAF1M_ORYSJ7.391e-5870.59CRS2-associated factor 1, mitochondrial OS=Oryza s... [more]
CAF2M_ARATH1.654e-4154.73CRS2-associated factor 2, mitochondrial OS=Arabido... [more]
CAF2M_ORYSJ2.822e-4155.78CRS2-associated factor 2, mitochondrial OS=Oryza s... [more]
CAF1P_ARATH1.959e-3456.10CRS2-associated factor 1, chloroplastic OS=Arabido... [more]
CAF2P_ORYSJ4.363e-3460.18CRS2-associated factor 2, chloroplastic OS=Oryza s... [more]
CAF2P_MAIZE1.270e-3359.29CRS2-associated factor 2, chloroplastic OS=Zea may... [more]
CAF1P_ORYSJ2.828e-3358.41CRS2-associated factor 1, chloroplastic OS=Oryza s... [more]
CAF1P_MAIZE6.301e-3357.52CRS2-associated factor 1, chloroplastic OS=Zea may... [more]
CAF2P_ARATH1.314e-3056.14CRS2-associated factor 2, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-545 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504057 ID=CF504057; Name=CF504057; organism=Citrus sinensis; type=EST; length=446bp
CGCGAGTGGACCGGAGTTTGTGCTCCGGCTGCGGACCCGAAGGTGAAGTC
GGCGGAGGAGGGAGCGGAGGATCCGAATTTGGAAGAGAAGAGGATACTTG
TGAGGGAAAGGATTCAGGGAGAGCCTTTAACTAATGCTGAGAGGAAGGCT
TTGGTGGAGAAGTGCCACCGAAATCGGACCAAGAGGCAAATCAATTTGGG
GAGAGATGGTTTAACGCATAACATGCTGAATGATATTCATAATCATTGGA
AACATGCTGAGGCAGTGAGGATTAAATGCCTAGGAGTCCCCACCGTTGAC
ATGAAAAATGTGTGCTTCCAGCTTGAGGATAAAACATTTGGAAAAATAAT
TTTTAGACACGGAGGTACACTTGTGCTTTACAGGGGCAGGAACTATAACC
CTAAGAAAAGGCCTGTGATCCCATTGATGCTGTGGAGACCTCATGA
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