CF504073 | Citrus Genome Database

Overview


Name	CF504073
Unique Name	CF504073
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	362

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7013	contig	Csv1_Contig7013:13..373.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 176.022 bits (445), Expect = 2.315e-47
Identity = 83/96 (86.46%), Postives = 86/96 (89.58%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRKFEHPRHGSLGFLPRKRA+RHRGKVKAFPKDDP+KPCRLT+FLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIET          YVKTP
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTP 96

HSP 2 Score: 32.7278 bits (73), Expect = 2.315e-47
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  318 PRGLRSLNTVWAQHL 362
            PRGLRSL TVWAQHL
Sbjct:   96 PRGLRSLCTVWAQHL 110

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 167.933 bits (424), Expect = 5.561e-46
Identity = 79/96 (82.29%), Postives = 83/96 (86.46%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRKFEHPRHGSLGFLPRKRA RHRGKVKAFPKDD +KPC+ TAF+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIET          YVKTP
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTP 96

HSP 2 Score: 36.1946 bits (82), Expect = 5.561e-46
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  318 PRGLRSLNTVWAQHL 362
            PRGLRSLNTVWAQHL
Sbjct:   96 PRGLRSLNTVWAQHL 110

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.551e-45
Identity = 78/96 (81.25%), Postives = 84/96 (87.50%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRKFEHPRHGSLGFLPRKR++RHRGKVK+FPKDD SKPC LT+F+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIET          YVKTP
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTP 96

HSP 2 Score: 34.6538 bits (78), Expect = 3.551e-45
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  318 PRGLRSLNTVWAQHL 362
            PRGLRSLN+VWAQHL
Sbjct:   96 PRGLRSLNSVWAQHL 110

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 9.718e-39
Identity = 71/96 (73.96%), Postives = 78/96 (81.25%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSH KFE PRHGSLGFLPRKRA+R RGKVKAFPKDD SKP  LTAFLGYKAGMTHIVRD+++PGSK+HK+E  EAVTIIET          YV+TP
Sbjct:    1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETP 96

HSP 2 Score: 32.7278 bits (73), Expect = 9.718e-39
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  318 PRGLRSLNTVWAQHL 362
            PRGLRSL TVWA+HL
Sbjct:   96 PRGLRSLTTVWAEHL 110

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.266e-38
Identity = 70/96 (72.92%), Postives = 78/96 (81.25%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSH KFE PRHGSLGFLPRKRA+R RGKVKAFPKDD SKP  LTAFLGYKAGMTHIVRD+++PGSK+HK+E  EAVT+IET          YV+TP
Sbjct:    1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETP 96

HSP 2 Score: 32.7278 bits (73), Expect = 1.266e-38
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  318 PRGLRSLNTVWAQHL 362
            PRGLRSL TVWA+HL
Sbjct:   96 PRGLRSLTTVWAEHL 110

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.025e-37
Identity = 66/96 (68.75%), Postives = 77/96 (80.21%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRK+E PRHGSL FLPRKRAARHRGKVK+FPKDDP KP  LTA +GYKAGMT +VRD+++PG+K+HKKE  EAVTIIET          Y++TP
Sbjct:    1 MSHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLDRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETP 96

HSP 2 Score: 32.7278 bits (73), Expect = 3.025e-37
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  318 PRGLRSLNTVWAQHL 362
            PRGLRSL TVWA+HL
Sbjct:   96 PRGLRSLTTVWAEHL 110

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 3.940e-37
Identity = 70/96 (72.92%), Postives = 80/96 (83.33%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ET          YV+TP
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETP 96

HSP 2 Score: 25.409 bits (54), Expect = 3.940e-37
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 3

Query:  318 PRGLRSLNTVWAQHL 362
            PRGLR+  TV+A+H+
Sbjct:   96 PRGLRTFKTVFAEHI 110

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 3.940e-37
Identity = 70/96 (72.92%), Postives = 80/96 (83.33%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ET          YV+TP
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETP 96

HSP 2 Score: 25.409 bits (54), Expect = 3.940e-37
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 3

Query:  318 PRGLRSLNTVWAQHL 362
            PRGLR+  TV+A+H+
Sbjct:   96 PRGLRTFKTVFAEHI 110

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 2.508e-36
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE   AVTI+ET          YV+TP
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVVAVTIVETPPMVVVGIVGYVETP 96

HSP 2 Score: 25.409 bits (54), Expect = 2.508e-36
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 3

Query:  318 PRGLRSLNTVWAQHL 362
            PRGLR+  TV+A+H+
Sbjct:   96 PRGLRTFKTVFAEHI 110

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 3.267e-36
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDD SKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ET          YV+TP
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETP 96

HSP 2 Score: 25.409 bits (54), Expect = 3.267e-36
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 3

Query:  318 PRGLRSLNTVWAQHL 362
            PRGLR+  TV+A+H+
Sbjct:   96 PRGLRTFKTVFAEHI 110

The following BLAST results are available for this feature:

BLAST of CF504073 vs. ExPASy Swiss-Prot

BLAST of CF504073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26


Match Name	E-value	Identity	Description
RL32_ARATH	2.315e-47	86.46	60S ribosomal protein L3-2 OS=Arabidopsis thaliana...	[more]
RL31_ARATH	5.561e-46	82.29	60S ribosomal protein L3-1 OS=Arabidopsis thaliana...	[more]
RL3_ORYSJ	3.551e-45	81.25	60S ribosomal protein L3 OS=Oryza sativa subsp. ja...	[more]
RL3B_SCHPO	9.718e-39	73.96	60S ribosomal protein L3-B OS=Schizosaccharomyces ...	[more]
RL3A_SCHPO	1.266e-38	72.92	60S ribosomal protein L3-A OS=Schizosaccharomyces ...	[more]
RL3_ASPFU	3.025e-37	68.75	60S ribosomal protein L3 OS=Aspergillus fumigatus ...	[more]
RL3_RAT	3.940e-37	72.92	60S ribosomal protein L3 OS=Rattus norvegicus GN=R...	[more]
RL3_HUMAN	3.940e-37	72.92	60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P...	[more]
RL3_MACFA	2.508e-36	71.88	60S ribosomal protein L3 OS=Macaca fascicularis GN...	[more]
RL3_MOUSE	3.267e-36	71.88	60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_119000-561 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_B02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504073 ID=CF504073; Name=CF504073; organism=Citrus sinensis; type=EST; length=362bp
GTCAGTCGCCGCAGCAGCTCAGAGGAGGAGAATGTCTCACAGGAAGTTTG
AGCACCCAAGGCATGGTTCCCTTGGATTTCTTCCAAGGAAGAGAGCTGCT
CGTCACAGAGGAAAGGTGAAGGCTTTTCCCAAGGATGACCCAAGCAAGCC
TTGCAGGCTCACTGCCTTTTTGGGTTACAAGGCTGGGATGACCCACATTG
TTAGGGATGTCGAGAAACCTGGATCTAAGCTTCACAAGAAGGAGACCTGT
GAGGCTGTTACCATTATTGAAACCCCTCCAATGATGGTGGTTGGAGTTGT
GGGATATGTGAAGACACCCTCGTGGTCTTCGCTCTTTGAACACTGTATGG
GCTCAGCATCTT