CF504074

Overview
NameCF504074
Unique NameCF504074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length151
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7013 contig Csv1_Contig7013:21..168. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504074 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 1.817e-12
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 3 
Query:   24 MSHRKFEHPRHGSLGFLPRKRACSSQRNR*RLFPRDDPSKPC 149
            MSHRKFEHPRHGSLGFLPRKRA S  R + + FP+DDP+KPC
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRA-SRHRGKVKAFPKDDPTKPC 41
[Close]
BLAST of CF504074 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.624e-11
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 3 
Query:   24 MSHRKFEHPRHGSLGFLPRKRACSSQRNR*RLFPRDDPSKPC 149
            MSHRKFEHPRHGSLGFLPRKR+ S  R + + FP+DD SKPC
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRS-SRHRGKVKSFPKDDVSKPC 41
[Close]
BLAST of CF504074 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 67.0106 bits (162), Expect = 3.427e-11
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 3 
Query:   24 MSHRKFEHPRHGSLGFLPRKRACSSQRNR*RLFPRDDPSKPC 149
            MSHRKFEHPRHGSLGFLPRKRA +  R + + FP+DD +KPC
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRA-NRHRGKVKAFPKDDQTKPC 41
The following BLAST results are available for this feature:
BLAST of CF504074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RL32_ARATH1.817e-1276.1960S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL3_ORYSJ2.624e-1173.8160S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL31_ARATH3.427e-1171.4360S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-562 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504074 ID=CF504074; Name=CF504074; organism=Citrus sinensis; type=EST; length=151bp
CCGCAGCAGCTCAAAGGAGGAGAATGTCTCACAGGAAGTTTGAGCACCCA
AGGCATGGTTCCCTTGGATTTCTTCCAAGGAAGAGAGCCTGCTCGTCACA
GAGGAATAGGTGAAGGCTTTTCCCAAGGGATGACCCAAGCAAGCCTTGCG
A
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