CF504090

Overview
NameCF504090
Unique NameCF504090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length426
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12990 contig Csv1_Contig12990:1..414. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504090 vs. ExPASy Swiss-Prot
Match: PPD3_ARATH (PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana GN=PPD3 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 6.009e-24
Identity = 59/103 (57.28%), Postives = 71/103 (68.93%), Query Frame = 3
Query:  126 DARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGL 425
            D+    + RI  +D     KRR+VM Q+A +    P  +S A A   A+E  RVYTDE NKFEISIPQDWQ+G  EPNGFKSITAFYPQE S+S+VS+ ITGL
Sbjct:   38 DSSNEEQHRISSRDHVGM-KRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQVGQAEPNGFKSITAFYPQETSTSNVSIAITGL 139          
The following BLAST results are available for this feature:
BLAST of CF504090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PPD3_ARATH6.009e-2457.28PsbP domain-containing protein 3, chloroplastic OS... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-578 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504090 ID=CF504090; Name=CF504090; organism=Citrus sinensis; type=EST; length=426bp
CTCCACTCCACACTTGGTCTCAGCGGCCTCACCACGCCTCCTTCACAGCT
TTTTCTAACAACAAAGGAACCAATCAATATAAAAAGCAATTTGTGTTCTG
CTGCAAGAAACAGGAACAAGAAGACGACGCAAGAACCCTTAACAGATTTC
GCATTGAAGAACAAGATGATGACTCTAGGACTAAAAGAAGAGAAGTGATG
TTTCAACTGGCCTTCACTGCGTGTTCTTTCCCAGCAATTGTTTCTTATGC
GCTTGCAGCGAATGAAGACCTCCGTGTTTATACTGATGAACTGAACAAGT
TTGAGATTTCGATACCCCAAGATTGGCAACTGGGCGCGGGGGAACCAAAT
GGATTCAAATCCATTACTGCTTTCTACCCACAAGAAGCATCTAGTTCAAG
CGTCAGTGTGGTGATCACGGGGCTTG
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