CF504092

Overview
NameCF504092
Unique NameCF504092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9394 contig Csv1_Contig9394:1231..1711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504092 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 1.077e-42
Identity = 82/149 (55.03%), Postives = 105/149 (70.47%), Query Frame = 1
Query:   13 FRKENGGWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDATGVKISVKIAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQTAHVPLAGENALPRYDEYAHEQIL 459
            F K NG + +  G+FFL+WYS  LL+HG++IL  A   F    VK+++K++GIHW Y   +HA ELTAGYYN   RDGY PIA+ML+RH AI NFTC+EMRD EQP DA   P++LV+QV S      + +AGENALPRYD  A+ QI+
Sbjct:  248 FFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQII 396          
BLAST of CF504092 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 170.244 bits (430), Expect = 4.093e-42
Identity = 82/152 (53.95%), Postives = 108/152 (71.05%), Query Frame = 1
Query:    4 TQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDATGVKISVKIAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQTAHVPLAGENALPRYDEYAHEQIL 459
            T+FFR  NG + +  G+FFL+WYS  L+ HG+++L  A  +F    V I+ K++GIHW Y   SHA ELTAG+YN   RDGY PIA+MLARH A  NFTC+EMRD EQP +A  AP++LV+QV S+    ++ +AGENALPRYD  A+ Q+L
Sbjct:  248 TEFFRP-NGTYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHWWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQML 398          
BLAST of CF504092 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.555e-41
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    4 TQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDATGVKISVKIAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQTAHVPLAGENALPRYDEYAHEQIL 459
            T+FF K NG + +  G+FFL+WYS  LL+HG++IL  A   F    VK+++K++GIHW Y +++HA ELTAGYYN   RDGY PIA+M++RH  I NFTC+EMRD EQ  DA  AP++LV+QV S     ++ +AGENAL RYD  A+ QI+
Sbjct:  246 TEFF-KTNGTYLTEKGKFFLTWYSNQLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHGILNFTCLEMRDSEQSSDAQSAPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQII 396          
BLAST of CF504092 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.465e-41
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    4 TQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDATGVKISVKIAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQTAHVPLAGENALPRYDEYAHEQIL 459
            T+FF K NG + +  G+FFL+WYS  LL+HG++IL  A   F    VK+++K++GIHW Y + +HA ELTAGYYN   RDGY PIA++++RH AI NFTC+EMRD EQ  DA  +P+KLV+QV S     ++ +AGENAL RYD  A+ QI+
Sbjct:  246 TEFF-KTNGTYLTEKGKFFLTWYSNQLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKAPNHAAELTAGYYNLDDRDGYRPIAKIVSRHHAILNFTCLEMRDSEQSSDAHSSPQKLVQQVLSGGWRENIEVAGENALSRYDATAYNQII 396          
BLAST of CF504092 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.317e-40
Identity = 87/155 (56.13%), Postives = 105/155 (67.74%), Query Frame = 1
Query:    4 TQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDATGVKISVKIAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQTAHVPLAGENALPRYDEYAHEQILRAA 468
            TQFFR +NG + S  G FFL+WYS  L+ HG+RIL  A  +F    V++++KI+GIHW Y   SHA ELTAGYYN   RDGY  IA+ML RH A  NFTC EMRD EQ   A+ APE+LV+QV SA     + +A ENALPRYD  A+  ILR A
Sbjct:  243 TQFFR-DNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDLEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNA 396          
BLAST of CF504092 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.720e-40
Identity = 86/155 (55.48%), Postives = 105/155 (67.74%), Query Frame = 1
Query:    4 TQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDATGVKISVKIAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQTAHVPLAGENALPRYDEYAHEQILRAA 468
            TQFFR +NG + +  G FFL+WYS  L+ HG+RIL  A  +F    V++++KI+GIHW Y   SHA ELTAGYYN   RDGY  IA+ML RH A  NFTC EMRD EQ   A+ APE+LV+QV SA     + +A ENALPRYD  A+  ILR A
Sbjct:  243 TQFFR-DNGTYLTEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNA 396          
BLAST of CF504092 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.831e-40
Identity = 79/152 (51.97%), Postives = 106/152 (69.74%), Query Frame = 1
Query:    4 TQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDATGVKISVKIAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQTAHVPLAGENALPRYDEYAHEQIL 459
            T+FF K NG + +  G+FFL+WYS  LL+HG+ IL  A   F    V +++K++GIHW Y +++HA ELTAGYYN   RDGY PIA+M++RH A  NFTC+EMRD EQ  DA   P++LV+QV S     ++ +AGENAL RYD  A+ QI+
Sbjct:  246 TEFF-KTNGTYLTEKGKFFLTWYSNQLLNHGDEILDEANKAFLGCKVNLAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHASLNFTCLEMRDSEQSSDAQSGPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQII 396          
BLAST of CF504092 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.483e-39
Identity = 84/155 (54.19%), Postives = 106/155 (68.39%), Query Frame = 1
Query:    4 TQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDATGVKISVKIAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQTAHVPLAGENALPRYDEYAHEQILRAA 468
            TQFF K+NG + +  G+FFLSWYS  L+ HG++IL  A  +F    V++++KI+GIHW Y   +HA ELTAGYYN   RDGY  IA+ML RH A  NFTC EMRD EQ ++A  APE+LV+QV SA     + +A ENAL RYD  A+  ILR A
Sbjct:  243 TQFF-KDNGTYLTEKGKFFLSWYSNKLIKHGDKILDEANKVFLGCRVQLAIKISGIHWWYRVPNHAAELTAGYYNLDDRDGYRTIARMLTRHHASMNFTCAEMRDSEQSEEAKSAPEELVQQVLSAGWREGLHVACENALGRYDATAYNTILRNA 396          
BLAST of CF504092 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.586e-38
Identity = 82/155 (52.90%), Postives = 103/155 (66.45%), Query Frame = 1
Query:    4 TQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDATGVKISVKIAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQTAHVPLAGENALPRYDEYAHEQILRAA 468
            TQFF  +NG + +  G+FFL+WYS  L+ HG++IL  A  +F    V++++K++GIHW Y   +HA ELTAGYYN   RDGY  IA ML RH A  NFTC EMRD EQ  +A  APE+LV+QV SA     + LA ENAL RYD  A+  ILR A
Sbjct:  243 TQFFA-DNGTYQTDKGKFFLTWYSNKLIKHGDKILDEANKVFLGCKVQLAIKVSGIHWWYNVPNHAAELTAGYYNLDDRDGYRTIAHMLTRHRASMNFTCAEMRDSEQSSEAKSAPEELVQQVLSAGWREGLNLACENALNRYDATAYNTILRNA 396          
BLAST of CF504092 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 6.763e-37
Identity = 74/153 (48.37%), Postives = 102/153 (66.67%), Query Frame = 1
Query:    1 DTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDATGVKISVKIAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQTAHVPLAGENALPRYDEYAHEQIL 459
            +T FF+K+ G + S  G+FF++WYS  L+ HG++IL  A  IF    V ++ K++GIHW Y   SHA ELTAGYYN   RDGY PIA+ML++H  I NFTC+EM+D +   +AL AP++LV++V S      + +AGENAL  Y    + QIL
Sbjct:  247 ETGFFKKD-GTYVSEKGKFFMTWYSNKLIFHGDQILGEANKIFAGLKVNLAAKVSGIHWLYNHHSHAAELTAGYYNLFKRDGYRPIARMLSKHYGILNFTCLEMKDTDNTAEALSAPQELVQEVLSKAWKEGIEVAGENALETYGAKGYNQIL 398          
The following BLAST results are available for this feature:
BLAST of CF504092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
AMYB_SOYBN1.077e-4255.03Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]
AMYB_IPOBA4.093e-4253.95Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
AMYB_TRIRP1.555e-4153.29Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]
AMYB_MEDSA3.465e-4153.29Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
AMYB_HORVU1.317e-4056.13Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_HORSP1.720e-4055.48Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_VIGUN3.831e-4051.97Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_WHEAT2.483e-3954.19Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]
AMYB_MAIZE3.586e-3852.90Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
AMYB_ARATH6.763e-3748.37Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-580 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504092 ID=CF504092; Name=CF504092; organism=Citrus sinensis; type=EST; length=481bp
GATACACAGTTTTTCCGAAAAGAAAATGGTGGTTGGTGTAGCCCTTATGG
TGAATTTTTCCTAAGCTGGTATTCGCAGATGCTCTTAGATCACGGAGAGA
GAATTCTCGCATCTGCCAAGTCAATTTTCGATGCTACAGGTGTTAAGATC
TCGGTTAAGATTGCAGGAATCCACTGGCACTATGGGTCTAGGTCCCATGC
CCCTGAGCTCACAGCTGGATATTACAATACACGATTCCGTGATGGTTACC
TCCCTATTGCCCAGATGCTAGCACGGCATGGTGCCATATTCAACTTTACT
TGCATAGAGATGCGTGATCATGAACAACCACAAGATGCCCTTTGTGCACC
TGAGAAGCTAGTCAAGCAAGTGGCTTCAGCAACTCAGACAGCACACGTTC
CTCTGGCCGGGGAAAATGCGTTGCCACGTTATGATGAATACGCTCACGAG
CAGATCTTGCGAGCAGCATCACTTGATGTAG
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