CF504100

Overview
NameCF504100
Unique NameCF504100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10716 contig Csv1_Contig10716:286..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_ARATH (Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thaliana GN=PARP1 PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.472e-71
Identity = 83/98 (84.69%), Postives = 92/98 (93.88%), Query Frame = 1
Query:  217 TLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEFSKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYGVNK 510
            TL+MSDLSTG+NSYYILQIIQ+DKGSDCYVFRKWGRVGN+KIGG+++EE SK DAV EFKRLFLEKTGN WE+WEQK NFQK+PGKF PLDIDYGVNK
Sbjct:  525 TLSMSDLSTGINSYYILQIIQEDKGSDCYVFRKWGRVGNEKIGGNKVEEMSKSDAVHEFKRLFLEKTGNTWESWEQKTNFQKQPGKFLPLDIDYGVNK 622          

HSP 2 Score: 106.686 bits (265), Expect = 2.472e-71
Identity = 51/71 (71.83%), Postives = 61/71 (85.92%), Query Frame = 3
Query:    3 KMKVPIVREDYLVDCFKRQKKLPFDLYKVEAVGESSSMVTIKVKGQSAVHEASGMQDTGHILEDGKSVYNT 215
            +MKV IVREDYLVDCFK+Q+KLPFD YK+E   E  S+VT+KVKG+SAVHEASG+Q+  HILEDG S+YNT
Sbjct:  456 RMKVAIVREDYLVDCFKKQRKLPFDKYKIEDTSE--SLVTVKVKGRSAVHEASGLQEHCHILEDGNSIYNT 524          
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_ORYSJ (Poly [ADP-ribose] polymerase 1 OS=Oryza sativa subsp. japonica GN=PARP1 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.209e-68
Identity = 79/104 (75.96%), Postives = 91/104 (87.50%), Query Frame = 1
Query:  199 KVFITPTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEFSKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYGVNK 510
            K     TLNMSDL+ GVNSYYILQ+I++D GSDCYVFRKWGRVGN+KIGG++LEE SK  A+ EF+RLFLEKTGNPWEAWEQK NFQK+PGKF+PLDIDYGV +
Sbjct:  512 KSIYNTTLNMSDLTRGVNSYYILQVIEEDNGSDCYVFRKWGRVGNEKIGGTKLEEMSKIHAIQEFRRLFLEKTGNPWEAWEQKTNFQKQPGKFYPLDIDYGVRQ 615          

HSP 2 Score: 103.219 bits (256), Expect = 3.209e-68
Identity = 48/73 (65.75%), Postives = 62/73 (84.93%), Query Frame = 3
Query:    3 KMKVPIVREDYLVDCFKRQKKLPFDLYKVEAVGESSS--MVTIKVKGQSAVHEASGMQDTGHILEDGKSVYNT 215
            ++K+PI+RE YL +C ++ + LPFDLYKVEA  ESS    +T+KVKG+SAVHE+SG+QDTGHILEDGKS+YNT
Sbjct:  445 RLKIPILREGYLGECIRKNRVLPFDLYKVEAALESSKGGTMTVKVKGRSAVHESSGLQDTGHILEDGKSIYNT 517          
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_MAIZE (Poly [ADP-ribose] polymerase 1 OS=Zea mays GN=PARP1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.202e-64
Identity = 74/104 (71.15%), Postives = 88/104 (84.62%), Query Frame = 1
Query:  199 KVFITPTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEFSKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYGVNK 510
            K     TLNMSDL+ GVNSYY+LQII+ D GS+CYVFRKWGRVG++KIGG +LEE SK +A+ EFKRLFLEKTGN WEAWE K NF+K+PG+F+PLD+DYGV K
Sbjct:  515 KSIYNATLNMSDLALGVNSYYVLQIIEQDDGSECYVFRKWGRVGSEKIGGQKLEEMSKTEAIKEFKRLFLEKTGNSWEAWECKTNFRKQPGRFYPLDVDYGVKK 618          

HSP 2 Score: 100.908 bits (250), Expect = 1.202e-64
Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 3
Query:    3 KMKVPIVREDYLVDCFKRQKKLPFDLYKVEAVGESS--SMVTIKVKGQSAVHEASGMQDTGHILEDGKSVYN 212
            ++K+PIVRE Y+ +C K+ K LPFDLYK+E   ESS  S VT+KVKG+SAVHE+SG+QDT HILEDGKS+YN
Sbjct:  448 RLKIPIVREGYIGECVKKNKMLPFDLYKLENALESSKGSTVTVKVKGRSAVHESSGLQDTAHILEDGKSIYN 519          
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_CRIGR (Poly [ADP-ribose] polymerase 1 OS=Cricetulus griseus GN=PARP1 PE=2 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 2.310e-26
Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = 1
Query:  199 KVFITPTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEF-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYG 501
            KVF + TL + D+  G NSYY LQ+++DDK S  ++FR WGRVG   IG ++LE+  SKEDAV  F +L+ EKTGN W +    +NF K P KF+PL+IDYG
Sbjct:  550 KVF-SATLGLVDIVKGTNSYYKLQLLEDDKESRYWIFRSWGRVGT-VIGSNKLEQMPSKEDAVEHFMKLYEEKTGNAWHS----KNFTKYPKKFYPLEIDYG 645          

HSP 2 Score: 38.5058 bits (88), Expect = 2.310e-26
Identity = 17/45 (37.78%), Postives = 28/45 (62.22%), Query Frame = 3
Query:   78 LYKVEAVGESSSMVTIKVKGQSAVHEASGMQDTGHILEDGKSVYN 212
            LYK E V +S   + + +KG +AV   SG++ + H+LE G  V++
Sbjct:  509 LYKEEGVNKSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFS 553          
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_MOUSE (Poly [ADP-ribose] polymerase 1 OS=Mus musculus GN=Parp1 PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 7.100e-25
Identity = 52/102 (50.98%), Postives = 72/102 (70.59%), Query Frame = 1
Query:  199 KVFITPTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEF-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYG 501
            KVF + TL + D+  G NSYY LQ+++DDK S  ++FR WGR+G   IG ++LE+  SKE+AV +F +L+ EKTGN W +    +NF K P KF+PL+IDYG
Sbjct:  550 KVF-SATLGLVDIVKGTNSYYKLQLLEDDKESRYWIFRSWGRLGT-VIGSNKLEQMPSKEEAVEQFMKLYEEKTGNAWHS----KNFTKYPKKFYPLEIDYG 645          

HSP 2 Score: 35.4242 bits (80), Expect = 7.100e-25
Identity = 15/44 (34.09%), Postives = 27/44 (61.36%), Query Frame = 3
Query:   81 YKVEAVGESSSMVTIKVKGQSAVHEASGMQDTGHILEDGKSVYN 212
            +K E V +S   + + +KG +AV   SG++ + H+LE G  V++
Sbjct:  510 FKEEGVNKSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFS 553          
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_BOVIN (Poly [ADP-ribose] polymerase 1 OS=Bos taurus GN=PARP1 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.565e-24
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1
Query:  199 KVFITPTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEF-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYG 501
            KVF + TL + D+  G NSYY LQ+++DDK S  ++FR WGRVG   IG ++LE+  SKEDA+  F +L+ EKTGN W +    +NF K P KF+PL+IDYG
Sbjct:  553 KVF-SATLGLVDIVKGTNSYYKLQLLEDDKESRYWIFRSWGRVGT-VIGSNKLEQMPSKEDAIEHFMKLYEEKTGNAWHS----KNFTKHPKKFYPLEIDYG 648          

HSP 2 Score: 32.3426 bits (72), Expect = 1.565e-24
Identity = 14/43 (32.56%), Postives = 24/43 (55.81%), Query Frame = 3
Query:   84 KVEAVGESSSMVTIKVKGQSAVHEASGMQDTGHILEDGKSVYN 212
            K E   +S   + + +KG +AV   SG++   H+LE G  V++
Sbjct:  514 KEEGTNKSEKRMKLTLKGGAAVDPDSGLEHNAHVLEKGGKVFS 556          
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_HUMAN (Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4)

HSP 1 Score: 98.2117 bits (243), Expect = 1.565e-24
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 1
Query:  199 KVFITPTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEF-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYG 501
            KVF + TL + D+  G NSYY LQ+++DDK +  ++FR WGRVG   IG ++LE+  SKEDA+  F +L+ EKTGN W +    +NF K P KF+PL+IDYG
Sbjct:  551 KVF-SATLGLVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVGT-VIGSNKLEQMPSKEDAIEHFMKLYEEKTGNAWHS----KNFTKYPKKFYPLEIDYG 646          

HSP 2 Score: 33.8834 bits (76), Expect = 1.565e-24
Identity = 14/43 (32.56%), Postives = 26/43 (60.47%), Query Frame = 3
Query:   84 KVEAVGESSSMVTIKVKGQSAVHEASGMQDTGHILEDGKSVYN 212
            K E + +S   + + +KG +AV   SG++ + H+LE G  V++
Sbjct:  512 KEEGINKSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFS 554          
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_RAT (Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicus GN=Parp1 PE=2 SV=4)

HSP 1 Score: 97.4413 bits (241), Expect = 2.036e-24
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 1
Query:  199 KVFITPTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEF-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYG 501
            KVF + TL + D+  G NSYY LQ+++ DK S  ++FR WGRVG   IG ++LE+  SKEDAV  F +L+ EKTGN W +    +NF K P KF+PL+IDYG
Sbjct:  551 KVF-SATLGLVDIVKGTNSYYKLQLLESDKESRYWIFRSWGRVGT-VIGSNKLEQMPSKEDAVEHFMKLYEEKTGNAWHS----KNFTKYPKKFYPLEIDYG 646          

HSP 2 Score: 34.2686 bits (77), Expect = 2.036e-24
Identity = 15/43 (34.88%), Postives = 26/43 (60.47%), Query Frame = 3
Query:   84 KVEAVGESSSMVTIKVKGQSAVHEASGMQDTGHILEDGKSVYN 212
            K E V +S   + + +KG +AV   SG++ + H+LE G  V++
Sbjct:  512 KEEGVNKSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFS 554          
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_CHICK (Poly [ADP-ribose] polymerase 1 OS=Gallus gallus GN=PARP1 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.286e-23
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 1
Query:  199 KVFITPTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEF-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYG 501
            K+F + TL + D+  G NSYY LQ+++DD+ S  +VFR WGRVG   IG ++LE+  SKEDAV  F  L+ EKTGN W +    +NF K P KF+PL+IDYG
Sbjct:  548 KIF-SATLGLVDIVKGTNSYYKLQLLEDDRESRYWVFRSWGRVGT-VIGSNKLEQMPSKEDAVEHFLNLYEEKTGNSWHS----KNFTKYPKKFYPLEIDYG 643          

HSP 2 Score: 31.5722 bits (70), Expect = 1.286e-23
Identity = 12/37 (32.43%), Postives = 23/37 (62.16%), Query Frame = 3
Query:  102 ESSSMVTIKVKGQSAVHEASGMQDTGHILEDGKSVYN 212
            +S   + + VKG +AV   SG++D+ H+ E G  +++
Sbjct:  515 KSEKKMKLTVKGGAAVDPDSGLEDSAHVFEKGGKIFS 551          
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_XENLA (Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenopus laevis GN=parp1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.028e-22
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  199 KVFITPTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEF-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYG 501
            K+F + TL + D++ G NSYY LQ+I+ D+ S  +VFR WGRVG   IG  +LEE  SKEDA+  F  L+ +KTGN W +     NF K P KF+PL+IDYG
Sbjct:  534 KIF-SATLGLVDITRGTNSYYKLQLIEHDRDSRYWVFRSWGRVGT-VIGSKKLEEMSSKEDAIEHFLNLYQDKTGNAWHS----PNFTKYPKKFYPLEIDYG 629          

HSP 2 Score: 28.4906 bits (62), Expect = 3.028e-22
Identity = 11/37 (29.73%), Postives = 23/37 (62.16%), Query Frame = 3
Query:  102 ESSSMVTIKVKGQSAVHEASGMQDTGHILEDGKSVYN 212
            +S   + + VKG +A+   S ++D+ H+LE G  +++
Sbjct:  501 KSEKKMKLTVKGGAAIDPDSELEDSCHVLETGGKIFS 537          
The following BLAST results are available for this feature:
BLAST of CF504100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PARP1_ARATH2.472e-7184.69Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thal... [more]
PARP1_ORYSJ3.209e-6875.96Poly [ADP-ribose] polymerase 1 OS=Oryza sativa sub... [more]
PARP1_MAIZE1.202e-6471.15Poly [ADP-ribose] polymerase 1 OS=Zea mays GN=PARP... [more]
PARP1_CRIGR2.310e-2652.94Poly [ADP-ribose] polymerase 1 OS=Cricetulus grise... [more]
PARP1_MOUSE7.100e-2550.98Poly [ADP-ribose] polymerase 1 OS=Mus musculus GN=... [more]
PARP1_BOVIN1.565e-2451.96Poly [ADP-ribose] polymerase 1 OS=Bos taurus GN=PA... [more]
PARP1_HUMAN1.565e-2450.98Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=... [more]
PARP1_RAT2.036e-2451.96Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicu... [more]
PARP1_CHICK1.286e-2351.96Poly [ADP-ribose] polymerase 1 OS=Gallus gallus GN... [more]
PARP1_XENLA3.028e-2250.98Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-588 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504100 ID=CF504100; Name=CF504100; organism=Citrus sinensis; type=EST; length=510bp
GGAAGATGAAAGTACCTATTGTTAGGGAGGATTACCTGGTTGATTGTTTT
AAAAGACAAAAGAAGCTTCCTTTCGATCTGTACAAAGTTGAAGCGGTTGG
TGAGTCTTCTAGCATGGTTACAATCAAAGTTAAAGGGCAAAGTGCTGTTC
ATGAAGCTTCTGGTATGCAAGATACGGGTCACATTCTTGAGGATGGAAAA
AGTGTTTATAACACCGACTTTGAATATGTCTGATTTATCAACTGGTGTTA
ACAGTTACTATATCCTGCAAATCATCCAAGATGATAAAGGGTCAGATTGT
TATGTGTTTCGTAAATGGGGTCGAGTGGGAAATGACAAGATTGGTGGAAG
CCAACTGGAAGAGTTTTCAAAAGAAGATGCAGTTTGTGAATTCAAACGTT
TGTTCCTTGAGAAGACTGGGAACCCATGGGAGGCTTGGGAACAGAAACAA
AATTTCCAGAAGAAACCTGGAAAATTCTTCCCACTGGATATTGATTATGG
AGTTAACAAA
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