CF504100
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_ARATH (Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thaliana GN=PARP1 PE=1 SV=2) HSP 1 Score: 182.185 bits (461), Expect = 2.472e-71 Identity = 83/98 (84.69%), Postives = 92/98 (93.88%), Query Frame = 1 Query: 217 TLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEFSKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYGVNK 510 TL+MSDLSTG+NSYYILQIIQ+DKGSDCYVFRKWGRVGN+KIGG+++EE SK DAV EFKRLFLEKTGN WE+WEQK NFQK+PGKF PLDIDYGVNK Sbjct: 525 TLSMSDLSTGINSYYILQIIQEDKGSDCYVFRKWGRVGNEKIGGNKVEEMSKSDAVHEFKRLFLEKTGNTWESWEQKTNFQKQPGKFLPLDIDYGVNK 622 HSP 2 Score: 106.686 bits (265), Expect = 2.472e-71 Identity = 51/71 (71.83%), Postives = 61/71 (85.92%), Query Frame = 3 Query: 3 KMKVPIVREDYLVDCFKRQKKLPFDLYKVEAVGESSSMVTIKVKGQSAVHEASGMQDTGHILEDGKSVYNT 215 +MKV IVREDYLVDCFK+Q+KLPFD YK+E E S+VT+KVKG+SAVHEASG+Q+ HILEDG S+YNT Sbjct: 456 RMKVAIVREDYLVDCFKKQRKLPFDKYKIEDTSE--SLVTVKVKGRSAVHEASGLQEHCHILEDGNSIYNT 524
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_ORYSJ (Poly [ADP-ribose] polymerase 1 OS=Oryza sativa subsp. japonica GN=PARP1 PE=2 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 3.209e-68 Identity = 79/104 (75.96%), Postives = 91/104 (87.50%), Query Frame = 1 Query: 199 KVFITPTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEFSKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYGVNK 510 K TLNMSDL+ GVNSYYILQ+I++D GSDCYVFRKWGRVGN+KIGG++LEE SK A+ EF+RLFLEKTGNPWEAWEQK NFQK+PGKF+PLDIDYGV + Sbjct: 512 KSIYNTTLNMSDLTRGVNSYYILQVIEEDNGSDCYVFRKWGRVGNEKIGGTKLEEMSKIHAIQEFRRLFLEKTGNPWEAWEQKTNFQKQPGKFYPLDIDYGVRQ 615 HSP 2 Score: 103.219 bits (256), Expect = 3.209e-68 Identity = 48/73 (65.75%), Postives = 62/73 (84.93%), Query Frame = 3 Query: 3 KMKVPIVREDYLVDCFKRQKKLPFDLYKVEAVGESSS--MVTIKVKGQSAVHEASGMQDTGHILEDGKSVYNT 215 ++K+PI+RE YL +C ++ + LPFDLYKVEA ESS +T+KVKG+SAVHE+SG+QDTGHILEDGKS+YNT Sbjct: 445 RLKIPILREGYLGECIRKNRVLPFDLYKVEAALESSKGGTMTVKVKGRSAVHESSGLQDTGHILEDGKSIYNT 517
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_MAIZE (Poly [ADP-ribose] polymerase 1 OS=Zea mays GN=PARP1 PE=2 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 1.202e-64 Identity = 74/104 (71.15%), Postives = 88/104 (84.62%), Query Frame = 1 Query: 199 KVFITPTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEFSKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYGVNK 510 K TLNMSDL+ GVNSYY+LQII+ D GS+CYVFRKWGRVG++KIGG +LEE SK +A+ EFKRLFLEKTGN WEAWE K NF+K+PG+F+PLD+DYGV K Sbjct: 515 KSIYNATLNMSDLALGVNSYYVLQIIEQDDGSECYVFRKWGRVGSEKIGGQKLEEMSKTEAIKEFKRLFLEKTGNSWEAWECKTNFRKQPGRFYPLDVDYGVKK 618 HSP 2 Score: 100.908 bits (250), Expect = 1.202e-64 Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 3 Query: 3 KMKVPIVREDYLVDCFKRQKKLPFDLYKVEAVGESS--SMVTIKVKGQSAVHEASGMQDTGHILEDGKSVYN 212 ++K+PIVRE Y+ +C K+ K LPFDLYK+E ESS S VT+KVKG+SAVHE+SG+QDT HILEDGKS+YN Sbjct: 448 RLKIPIVREGYIGECVKKNKMLPFDLYKLENALESSKGSTVTVKVKGRSAVHESSGLQDTAHILEDGKSIYN 519
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_CRIGR (Poly [ADP-ribose] polymerase 1 OS=Cricetulus griseus GN=PARP1 PE=2 SV=3) HSP 1 Score: 99.7525 bits (247), Expect = 2.310e-26 Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = 1 Query: 199 KVFITPTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEF-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYG 501 KVF + TL + D+ G NSYY LQ+++DDK S ++FR WGRVG IG ++LE+ SKEDAV F +L+ EKTGN W + +NF K P KF+PL+IDYG Sbjct: 550 KVF-SATLGLVDIVKGTNSYYKLQLLEDDKESRYWIFRSWGRVGT-VIGSNKLEQMPSKEDAVEHFMKLYEEKTGNAWHS----KNFTKYPKKFYPLEIDYG 645 HSP 2 Score: 38.5058 bits (88), Expect = 2.310e-26 Identity = 17/45 (37.78%), Postives = 28/45 (62.22%), Query Frame = 3 Query: 78 LYKVEAVGESSSMVTIKVKGQSAVHEASGMQDTGHILEDGKSVYN 212 LYK E V +S + + +KG +AV SG++ + H+LE G V++ Sbjct: 509 LYKEEGVNKSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFS 553
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_MOUSE (Poly [ADP-ribose] polymerase 1 OS=Mus musculus GN=Parp1 PE=1 SV=3) HSP 1 Score: 97.8265 bits (242), Expect = 7.100e-25 Identity = 52/102 (50.98%), Postives = 72/102 (70.59%), Query Frame = 1 Query: 199 KVFITPTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEF-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYG 501 KVF + TL + D+ G NSYY LQ+++DDK S ++FR WGR+G IG ++LE+ SKE+AV +F +L+ EKTGN W + +NF K P KF+PL+IDYG Sbjct: 550 KVF-SATLGLVDIVKGTNSYYKLQLLEDDKESRYWIFRSWGRLGT-VIGSNKLEQMPSKEEAVEQFMKLYEEKTGNAWHS----KNFTKYPKKFYPLEIDYG 645 HSP 2 Score: 35.4242 bits (80), Expect = 7.100e-25 Identity = 15/44 (34.09%), Postives = 27/44 (61.36%), Query Frame = 3 Query: 81 YKVEAVGESSSMVTIKVKGQSAVHEASGMQDTGHILEDGKSVYN 212 +K E V +S + + +KG +AV SG++ + H+LE G V++ Sbjct: 510 FKEEGVNKSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFS 553
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_BOVIN (Poly [ADP-ribose] polymerase 1 OS=Bos taurus GN=PARP1 PE=2 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 1.565e-24 Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1 Query: 199 KVFITPTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEF-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYG 501 KVF + TL + D+ G NSYY LQ+++DDK S ++FR WGRVG IG ++LE+ SKEDA+ F +L+ EKTGN W + +NF K P KF+PL+IDYG Sbjct: 553 KVF-SATLGLVDIVKGTNSYYKLQLLEDDKESRYWIFRSWGRVGT-VIGSNKLEQMPSKEDAIEHFMKLYEEKTGNAWHS----KNFTKHPKKFYPLEIDYG 648 HSP 2 Score: 32.3426 bits (72), Expect = 1.565e-24 Identity = 14/43 (32.56%), Postives = 24/43 (55.81%), Query Frame = 3 Query: 84 KVEAVGESSSMVTIKVKGQSAVHEASGMQDTGHILEDGKSVYN 212 K E +S + + +KG +AV SG++ H+LE G V++ Sbjct: 514 KEEGTNKSEKRMKLTLKGGAAVDPDSGLEHNAHVLEKGGKVFS 556
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_HUMAN (Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4) HSP 1 Score: 98.2117 bits (243), Expect = 1.565e-24 Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 1 Query: 199 KVFITPTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEF-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYG 501 KVF + TL + D+ G NSYY LQ+++DDK + ++FR WGRVG IG ++LE+ SKEDA+ F +L+ EKTGN W + +NF K P KF+PL+IDYG Sbjct: 551 KVF-SATLGLVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVGT-VIGSNKLEQMPSKEDAIEHFMKLYEEKTGNAWHS----KNFTKYPKKFYPLEIDYG 646 HSP 2 Score: 33.8834 bits (76), Expect = 1.565e-24 Identity = 14/43 (32.56%), Postives = 26/43 (60.47%), Query Frame = 3 Query: 84 KVEAVGESSSMVTIKVKGQSAVHEASGMQDTGHILEDGKSVYN 212 K E + +S + + +KG +AV SG++ + H+LE G V++ Sbjct: 512 KEEGINKSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFS 554
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_RAT (Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicus GN=Parp1 PE=2 SV=4) HSP 1 Score: 97.4413 bits (241), Expect = 2.036e-24 Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 1 Query: 199 KVFITPTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEF-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYG 501 KVF + TL + D+ G NSYY LQ+++ DK S ++FR WGRVG IG ++LE+ SKEDAV F +L+ EKTGN W + +NF K P KF+PL+IDYG Sbjct: 551 KVF-SATLGLVDIVKGTNSYYKLQLLESDKESRYWIFRSWGRVGT-VIGSNKLEQMPSKEDAVEHFMKLYEEKTGNAWHS----KNFTKYPKKFYPLEIDYG 646 HSP 2 Score: 34.2686 bits (77), Expect = 2.036e-24 Identity = 15/43 (34.88%), Postives = 26/43 (60.47%), Query Frame = 3 Query: 84 KVEAVGESSSMVTIKVKGQSAVHEASGMQDTGHILEDGKSVYN 212 K E V +S + + +KG +AV SG++ + H+LE G V++ Sbjct: 512 KEEGVNKSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFS 554
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_CHICK (Poly [ADP-ribose] polymerase 1 OS=Gallus gallus GN=PARP1 PE=1 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 1.286e-23 Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 1 Query: 199 KVFITPTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEF-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYG 501 K+F + TL + D+ G NSYY LQ+++DD+ S +VFR WGRVG IG ++LE+ SKEDAV F L+ EKTGN W + +NF K P KF+PL+IDYG Sbjct: 548 KIF-SATLGLVDIVKGTNSYYKLQLLEDDRESRYWVFRSWGRVGT-VIGSNKLEQMPSKEDAVEHFLNLYEEKTGNSWHS----KNFTKYPKKFYPLEIDYG 643 HSP 2 Score: 31.5722 bits (70), Expect = 1.286e-23 Identity = 12/37 (32.43%), Postives = 23/37 (62.16%), Query Frame = 3 Query: 102 ESSSMVTIKVKGQSAVHEASGMQDTGHILEDGKSVYN 212 +S + + VKG +AV SG++D+ H+ E G +++ Sbjct: 515 KSEKKMKLTVKGGAAVDPDSGLEDSAHVFEKGGKIFS 551
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP1_XENLA (Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenopus laevis GN=parp1 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.028e-22 Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 1 Query: 199 KVFITPTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEF-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYG 501 K+F + TL + D++ G NSYY LQ+I+ D+ S +VFR WGRVG IG +LEE SKEDA+ F L+ +KTGN W + NF K P KF+PL+IDYG Sbjct: 534 KIF-SATLGLVDITRGTNSYYKLQLIEHDRDSRYWVFRSWGRVGT-VIGSKKLEEMSSKEDAIEHFLNLYQDKTGNAWHS----PNFTKYPKKFYPLEIDYG 629 HSP 2 Score: 28.4906 bits (62), Expect = 3.028e-22 Identity = 11/37 (29.73%), Postives = 23/37 (62.16%), Query Frame = 3 Query: 102 ESSSMVTIKVKGQSAVHEASGMQDTGHILEDGKSVYN 212 +S + + VKG +A+ S ++D+ H+LE G +++ Sbjct: 501 KSEKKMKLTVKGGAAIDPDSELEDSCHVLETGGKIFS 537 The following BLAST results are available for this feature:
BLAST of CF504100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504100 ID=CF504100; Name=CF504100; organism=Citrus sinensis; type=EST; length=510bpback to top |