CF504103

Overview
NameCF504103
Unique NameCF504103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig518 contig Csv1_Contig518:1..288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB2_ARATH (Tubulin beta-2/beta-3 chain OS=Arabidopsis thaliana GN=TUBB2 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.168e-35
Identity = 66/73 (90.41%), Postives = 72/73 (98.63%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIG+KFW+VVCAEHGIDPTG+Y GD+DLQLERINVYYNEASCGR+VPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB2_PEA (Tubulin beta-2 chain (Fragment) OS=Pisum sativum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.992e-35
Identity = 66/71 (92.96%), Postives = 70/71 (98.59%), Query Frame = 1
Query:   76 EILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            EI+HIQGGQCGNQIG+KFW+VVCAEHGIDPTG+Y GDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM
Sbjct:    1 EIVHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYGGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 71          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.571e-35
Identity = 64/73 (87.67%), Postives = 71/73 (97.26%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIGSKFW+VVC EHGIDPTG+Y G++DLQLER+NVYYNEASCGRYVPRA+LMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYVPRAILMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB8_ARATH (Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TUBB8 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 9.888e-35
Identity = 64/73 (87.67%), Postives = 71/73 (97.26%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIG+KFW+VVCAEHGID TG+YQG+ DLQLER+NVYYNEASCGR+VPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB2_ORYSJ (Tubulin beta-2 chain OS=Oryza sativa subsp. japonica GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.888e-35
Identity = 64/73 (87.67%), Postives = 71/73 (97.26%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIG+KFW+VVCAEHGID TG+Y GD+DLQLER+NVYYNEASCGR+VPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB1_MAIZE (Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.687e-34
Identity = 64/73 (87.67%), Postives = 71/73 (97.26%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIG+KFW+VVCAEHGID TG+Y GD+DLQLER+NVYYNEASCGR+VPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYGGDSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB6_ORYSJ (Tubulin beta-6 chain OS=Oryza sativa subsp. japonica GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.203e-34
Identity = 64/73 (87.67%), Postives = 70/73 (95.89%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIGSKFW+VVC EHGIDPTG+Y G +DLQLER+NVYYNEASCGR+VPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB6_MAIZE (Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.877e-34
Identity = 63/73 (86.30%), Postives = 71/73 (97.26%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIG+KFW+VVC EHGIDPTG+Y G++DLQLER+NVYYNEASCGR+VPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB5_WHEAT (Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.877e-34
Identity = 64/73 (87.67%), Postives = 70/73 (95.89%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIGSKFW+VVC EHGIDPTG+Y G +DLQLER+NVYYNEASCGR+VPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB5_MAIZE (Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.877e-34
Identity = 64/73 (87.67%), Postives = 70/73 (95.89%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIGSKFW+VVC EHGIDPTG+Y G +DLQLER+NVYYNEASCGR+VPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTM 73          
The following BLAST results are available for this feature:
BLAST of CF504103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
TBB2_ARATH1.168e-3590.41Tubulin beta-2/beta-3 chain OS=Arabidopsis thalian... [more]
TBB2_PEA1.992e-3592.96Tubulin beta-2 chain (Fragment) OS=Pisum sativum G... [more]
TBB6_ARATH7.571e-3587.67Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB8_ARATH9.888e-3587.67Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB2_ORYSJ9.888e-3587.67Tubulin beta-2 chain OS=Oryza sativa subsp. japoni... [more]
TBB1_MAIZE1.687e-3487.67Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=... [more]
TBB6_ORYSJ2.203e-3487.67Tubulin beta-6 chain OS=Oryza sativa subsp. japoni... [more]
TBB6_MAIZE2.877e-3486.30Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=... [more]
TBB5_WHEAT2.877e-3487.67Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5... [more]
TBB5_MAIZE2.877e-3487.67Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-591 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504103 ID=CF504103; Name=CF504103; organism=Citrus sinensis; type=EST; length=288bp
GAAAAAGGAAGAATCCCCTGAAAATATCCTCTGCAAATCTCGCTAATCAA
GAAACCCCAAAAGAAGAAAGTGCGTGAAATCCTTCACATTCAAGGGGGCC
AATGCGGGAACCAAATCGGATCCAAGTTCTGGGATGTGGTTTGCGCCGAG
CACGGTATAGACCCGACCGGAAAGTATCAAGGGGATACCGATTTGCAGCT
TGAGAGGATTAATGTGTATTACAACGAGGCAAGTTGCGGGAGATACGTGC
CCAGGGCCGTGCTCATGGATCTTGAACCTGGGACCATG
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