CF504106

Overview
NameCF504106
Unique NameCF504106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10875 contig Csv1_Contig10875:140..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE2_CYATE (UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetragonoloba PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 1.186e-67
Identity = 120/138 (86.96%), Postives = 127/138 (92.03%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESSNSTS 416
            VAVGRRP LTVFG DY+T DGTGVRDYIHV+DLADGHIAAL KL+DPKIGCEVYNLGTGKGTSVLEMV AFE+ASGKKIPLV +GRRPGDAE+VYAST KAERELNWKAKYGIDEMCRDQWNWASKNPYGY  S  +S
Sbjct:  212 VAVGRRPALTVFGNDYTTSDGTGVRDYIHVVDLADGHIAALRKLNDPKIGCEVYNLGTGKGTSVLEMVKAFEQASGKKIPLVMAGRRPGDAEVVYASTNKAERELNWKAKYGIDEMCRDQWNWASKNPYGYGGSEDSS 349          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE3_ARATH (UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g23920 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 3.230e-65
Identity = 119/138 (86.23%), Postives = 125/138 (90.58%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESSNSTS 416
            VAVGRRP LTVFGTDY TKDGTGVRDYIHV+DLADGHIAAL KLDD KI CEVYNLGTG GTSVLEMVAAFEKASGKKIPLV +GRRPGDAE+VYAST KAERELNWKAK GI+EMCRD WNWAS NPYGY SS++ S
Sbjct:  211 VAVGRRPHLTVFGTDYKTKDGTGVRDYIHVMDLADGHIAALRKLDDLKISCEVYNLGTGNGTSVLEMVAAFEKASGKKIPLVMAGRRPGDAEVVYASTEKAERELNWKAKNGIEEMCRDLWNWASNNPYGYNSSSNGS 348          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE2_ARATH (UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana GN=At4g10960 PE=2 SV=3)

HSP 1 Score: 244.202 bits (622), Expect = 2.734e-64
Identity = 116/135 (85.93%), Postives = 124/135 (91.85%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESSN 407
            VAVGRRP LTVFG DY+TKDGTGVRDYIHVIDLADGHIAAL KL+D KIGCEVYNLGTG GTSVLEMV AFEKASGKKIPLV +GRRPGDAE+VYAST +AE ELNWKAKYGI+EMCRD WNWAS NPYGY+SS+
Sbjct:  212 VAVGRRPHLTVFGNDYNTKDGTGVRDYIHVIDLADGHIAALRKLEDCKIGCEVYNLGTGNGTSVLEMVDAFEKASGKKIPLVIAGRRPGDAEVVYASTERAESELNWKAKYGIEEMCRDLWNWASNNPYGYDSSS 346          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE1_ARATH (UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana GN=At1g12780 PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 3.350e-54
Identity = 101/134 (75.37%), Postives = 113/134 (84.33%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKL-DDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGYES 401
            VAVGR PEL V+G DY T+DG+ VRDYIHV+DLADGHIAAL KL  DPKIGC  YNLGTG+GTSVLEMVAAFEKASGKKIP+    RR GDA  VYAST KAE+EL WKAKYG+DEMCRDQW WA+ NP+GY++
Sbjct:  216 VAVGRLPELNVYGHDYPTEDGSAVRDYIHVMDLADGHIAALRKLFADPKIGCTAYNLGTGQGTSVLEMVAAFEKASGKKIPIKLCPRRSGDATAVYASTEKAEKELGWKAKYGVDEMCRDQWKWANNNPWGYQN 349          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE1_CYATE (UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis tetragonoloba PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 4.837e-53
Identity = 98/136 (72.06%), Postives = 110/136 (80.88%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKL-DDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESSN 407
            VAV R PEL ++G DY TKDGT +RDYIHV+DLADGHIAAL KL     IGC  YNLGTG+GTSVLEMVAAFEKASGKKIP+    RRPGDA  VYAST KAE+EL WKAKYG++EMCRDQW WAS NP+GY+  +
Sbjct:  219 VAVARLPELNIYGHDYPTKDGTAIRDYIHVMDLADGHIAALRKLFTTDNIGCTAYNLGTGRGTSVLEMVAAFEKASGKKIPIKMCPRRPGDATAVYASTEKAEKELGWKAKYGVEEMCRDQWKWASNNPWGYQGKH 354          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE1_PEA (UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 9.122e-52
Identity = 97/132 (73.48%), Postives = 108/132 (81.82%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKL-DDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 395
            VAVGR PEL V+G DY T+DG+ +RDYIHV+DLADGHIAAL KL     IGC  YNLGTG+G+SVLEMVAAFEKASGKKI L    RRPGDA  VYAST KAE+EL WKAKYG++EMCRDQWNWA  NP+GY
Sbjct:  215 VAVGRLPELNVYGHDYPTRDGSAIRDYIHVMDLADGHIAALRKLFTSENIGCTAYNLGTGRGSSVLEMVAAFEKASGKKIALKLCPRRPGDATEVYASTAKAEKELGWKAKYGVEEMCRDQWNWAKNNPWGY 346          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_BACSU (UDP-glucose 4-epimerase OS=Bacillus subtilis GN=galE PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 9.462e-41
Identity = 79/134 (58.96%), Postives = 98/134 (73.13%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESS 404
            VAVG+  +L+VFG DY TKDGTGVRDYIHV+DLA+GH+ AL K+ +   G + YNLGTG G SVLEMV AFEK SGK++P   + RRPGD    +A   KA+REL W+AK G++EMC D W W S N  GY+S+
Sbjct:  206 VAVGKLEQLSVFGNDYPTKDGTGVRDYIHVVDLAEGHVKALEKVLN-STGADAYNLGTGTGYSVLEMVKAFEKVSGKEVPYRFADRRPGDIATCFADPAKAKRELGWEAKRGLEEMCADSWRWQSSNVNGYKSA 338          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_HUMAN (UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 2.108e-40
Identity = 79/131 (60.31%), Postives = 91/131 (69.47%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 395
            VA+GRR  L VFG DY T+DGTGVRDYIHV+DLA GHIAAL KL + + GC +YNLGTG G SVL+MV A EKASGKKIP     RR GD    YA+   A+ EL W A  G+D MC D W W  +NP G+
Sbjct:  215 VAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGF 344          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_PONAB (UDP-glucose 4-epimerase OS=Pongo abelii GN=GALE PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.596e-40
Identity = 79/131 (60.31%), Postives = 90/131 (68.70%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 395
            VA+GRR  L VFG DY T+DGTGVRDYIHV+DLA GHIAAL KL + + GC +YNLGTG G SVL+MV A EKASGKKIP     RR GD    YA+   A  EL W A  G+D MC D W W  +NP G+
Sbjct:  215 VAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAHEELGWTAALGLDRMCEDLWRWQKQNPSGF 344          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_RAT (UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Gale PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.046e-39
Identity = 79/130 (60.77%), Postives = 90/130 (69.23%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYG 392
            VA+GRR  L VFG DY+T+DGTGVRDYIHV+DLA GHIAAL KL + + GC +YNLGTG G SVL+MV A EKASGKKIP     RR GD    YA+   A  EL W A  G+D MC D W W  +NP G
Sbjct:  214 VAIGRREALNVFGDDYATEDGTGVRDYIHVVDLAKGHIAALKKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAHEELGWTAALGLDRMCEDLWRWQKQNPSG 342          
The following BLAST results are available for this feature:
BLAST of CF504106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
GALE2_CYATE1.186e-6786.96UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetrag... [more]
GALE3_ARATH3.230e-6586.23UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana ... [more]
GALE2_ARATH2.734e-6485.93UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana ... [more]
GALE1_ARATH3.350e-5475.37UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana ... [more]
GALE1_CYATE4.837e-5372.06UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis tetrag... [more]
GALE1_PEA9.122e-5273.48UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE P... [more]
GALE_BACSU9.462e-4158.96UDP-glucose 4-epimerase OS=Bacillus subtilis GN=ga... [more]
GALE_HUMAN2.108e-4060.31UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE... [more]
GALE_PONAB3.596e-4060.31UDP-glucose 4-epimerase OS=Pongo abelii GN=GALE PE... [more]
GALE_RAT1.046e-3960.77UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Ga... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-594 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504106 ID=CF504106; Name=CF504106; organism=Citrus sinensis; type=EST; length=521bp
AAGTTGCTGTTGGCAGGCGTCCAGAGCTGACAGTATTTGGAACTGATTAC
TCAACAAAGGATGGTACTGGGGTCCGTGATTACATTCATGTTATTGACTT
AGCTGATGGGCACATTGCTGCATTGCATAAGCTTGATGATCCTAAGATAG
GTTGTGAGGTGTACAACTTGGGAACGGGAAAAGGGACATCAGTTTTGGAG
ATGGTTGCAGCATTTGAAAAAGCCTCTGGAAAGAAAATTCCTCTTGTAAA
GTCTGGGAGGCGACCCGGTGACGCAGAAATTGTTTATGCATCAACAGGAA
AGGCAGAACGTGAATTGAATTGGAAGGCAAAATATGGCATTGACGAGATG
TGTAGGGATCAATGGAATTGGGCCAGCAAGAACCCTTATGGCTATGAATC
TTCCAACTCGACTAGCTAATAACTGGCATTTGTCATCCTTCTTAGTAGTT
CCTCGCTATATACAGTGTCTATTCTGTACACTTAATTATCAGATTTTTAA
GCTGAAAAACCTTGTGGTATT
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