CF504108

Overview
NameCF504108
Unique NameCF504108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3685 contig Csv1_Contig3685:811..1228. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_ARATH (Phosphoserine aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=At4g35630 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.767e-55
Identity = 105/133 (78.95%), Postives = 113/133 (84.96%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            HDEN+SLYNTPPC+ IYMCGLVFE LLE GGL EVEK N++KA+LLYN I+ SNGF+RCPVEKSVRS MNVPFTLEKS+L            MVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA
Sbjct:  298 HDENSSLYNTPPCFGIYMCGLVFEDLLEQGGLKEVEKKNQRKADLLYNAIEESNGFFRCPVEKSVRSLMNVPFTLEKSELEAEFIKEAAKEKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 430          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_SPIOL (Phosphoserine aminotransferase, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.481e-51
Identity = 100/133 (75.19%), Postives = 108/133 (81.20%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            H +N SLYNTPPCY IYMCGLVFE LL  GGL EVEK N+ KA++LY+ ID SNGFY+CPVEKSVRS MNVPFTLEKS+L            MV LKGHRSVGGMRASIYNAMPLAGVEKLVAFMK+FQAKHA
Sbjct:  298 HADNKSLYNTPPCYGIYMCGLVFEDLLNQGGLVEVEKKNKAKAQVLYDAIDESNGFYKCPVEKSVRSLMNVPFTLEKSELEGDFIKEAAKEKMVALKGHRSVGGMRASIYNAMPLAGVEKLVAFMKEFQAKHA 430          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_LARHH (Phosphoserine aminotransferase OS=Laribacter hongkongensis (strain HLHK9) GN=serC PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.316e-35
Identity = 71/132 (53.79%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            H + +S+YNTPP Y IYM GLVF++L + GG+  ++  N +KA LLY+ ID S+GFYRCPV+   RS MNVPF L    L            ++QLKGHRSVGG+RASIYNAMP  GV+ LVAFM +F  +H
Sbjct:  227 HADADSMYNTPPTYAIYMAGLVFQWLKDNGGVRGIQMRNEEKAGLLYHTIDSSDGFYRCPVDVECRSRMNVPFRLRTEVLEKRFVDEADMAGLLQLKGHRSVGGVRASIYNAMPFEGVKALVAFMAEFARRH 358          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_NITEU (Phosphoserine aminotransferase OS=Nitrosomonas europaea GN=serC PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.330e-35
Identity = 73/133 (54.89%), Postives = 93/133 (69.92%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            H +N S+YNTPP Y IY+ GLV E+L + GGL  +E+ N  KA+L+Y++ID S+ FY CPV ++ RS MNVPFTL    L            ++QLKGHRSVGGMRASIYNAMPL GV+ LV FM++F+  HA
Sbjct:  237 HADNASMYNTPPTYAIYIMGLVMEWLKKQGGLTAIEQRNIAKAKLIYDLIDVSS-FYHCPVNQADRSRMNVPFTLSDPGLDDAFLKQAQAHGLIQLKGHRSVGGMRASIYNAMPLEGVQTLVTFMREFEKNHA 368          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BORPE (Phosphoserine aminotransferase OS=Bordetella pertussis GN=serC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.293e-33
Identity = 69/129 (53.49%), Postives = 91/129 (70.54%), Query Frame = 1
Query:   10 NNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++S YNTPP + IY+ GLVF+++   GG+  +E+ NR KAELLY  +DGS  FYR PV+ SVRS MNVPF L    L            ++QLKGH+SVGGMRASIYNAMPLAGV+ L+ ++K+F+ +H
Sbjct:  249 DHSRYNTPPTFAIYVMGLVFKWIKAHGGVRGMEEANRAKAELLYGYLDGS-AFYRNPVQASVRSRMNVPFVLRDESLNDAFLQGAEAAGLMQLKGHKSVGGMRASIYNAMPLAGVQALIDYLKEFERRH 376          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BORPA (Phosphoserine aminotransferase OS=Bordetella parapertussis GN=serC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.179e-32
Identity = 68/129 (52.71%), Postives = 91/129 (70.54%), Query Frame = 1
Query:   10 NNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++S YNTPP + IY+ GLVF+++   GG+  +E+ NR KAELLY  +DGS  FYR PV+ +VRS MNVPF L    L            ++QLKGH+SVGGMRASIYNAMPLAGV+ L+ ++K+F+ +H
Sbjct:  249 DHSRYNTPPTFAIYVMGLVFKWIKAHGGVRGMEEANRAKAELLYGYLDGS-AFYRNPVQPAVRSRMNVPFVLRDESLNDAFLQGAEAAGLMQLKGHKSVGGMRASIYNAMPLAGVQALIDYLKEFERRH 376          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BORBR (Phosphoserine aminotransferase OS=Bordetella bronchiseptica GN=serC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.179e-32
Identity = 68/129 (52.71%), Postives = 91/129 (70.54%), Query Frame = 1
Query:   10 NNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++S YNTPP + IY+ GLVF+++   GG+  +E+ NR KAELLY  +DGS  FYR PV+ +VRS MNVPF L    L            ++QLKGH+SVGGMRASIYNAMPLAGV+ L+ ++K+F+ +H
Sbjct:  249 DHSRYNTPPTFAIYVMGLVFKWIKAHGGVRGMEEANRAKAELLYGYLDGS-AFYRNPVQPAVRSRMNVPFVLRDESLNDAFLQGAEAAGLMQLKGHKSVGGMRASIYNAMPLAGVQALIDYLKEFERRH 376          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BURVG (Phosphoserine aminotransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=serC PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.540e-32
Identity = 73/131 (55.73%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            ENNSLYNTPP Y IY+ GLVF++L   GGL  +E  N +KA+LLY+ ID S GFY   VE +VRS MNVPF L                 ++QLKGH+SVGGMRASIYNA+PL GV+ LV +MKDF+ + A
Sbjct:  231 ENNSLYNTPPTYAIYIAGLVFQWLKRQGGLAAIEARNIEKAKLLYDTIDAS-GFYLNKVEPAVRSRMNVPFFLADETRNEDFLAGAKARGLLQLKGHKSVGGMRASIYNAVPLEGVKALVEYMKDFERRDA 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_ACIF5 (Phosphoserine aminotransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=serC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.627e-32
Identity = 67/130 (51.54%), Postives = 89/130 (68.46%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            +  S++NTPP + IY+ GLVF++L +LGGL  + ++N +KA LLY+ ID S GFY  PVE   RS MNVPFTL  + +            ++QLKGHRSVGGMRASIYNAMP AGV+ L  +++DF  +H
Sbjct:  232 KEESMHNTPPTFAIYVAGLVFKWLKQLGGLERMAEINARKARLLYDAIDESRGFYANPVETRNRSRMNVPFTLADAAMDEAFLKGARSHGLIQLKGHRSVGGMRASIYNAMPEAGVQILADYLRDFARQH 361          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_ACIF2 (Phosphoserine aminotransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=serC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.627e-32
Identity = 67/130 (51.54%), Postives = 89/130 (68.46%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            +  S++NTPP + IY+ GLVF++L +LGGL  + ++N +KA LLY+ ID S GFY  PVE   RS MNVPFTL  + +            ++QLKGHRSVGGMRASIYNAMP AGV+ L  +++DF  +H
Sbjct:  232 KEESMHNTPPTFAIYVAGLVFKWLKQLGGLERMAEINARKARLLYDAIDESRGFYANPVETRNRSRMNVPFTLADAAMDEAFLKGARSHGLIQLKGHRSVGGMRASIYNAMPEAGVQILADYLRDFARQH 361          
The following BLAST results are available for this feature:
BLAST of CF504108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_ARATH3.767e-5578.95Phosphoserine aminotransferase, chloroplastic OS=A... [more]
SERC_SPIOL1.481e-5175.19Phosphoserine aminotransferase, chloroplastic OS=S... [more]
SERC_LARHH3.316e-3553.79Phosphoserine aminotransferase OS=Laribacter hongk... [more]
SERC_NITEU4.330e-3554.89Phosphoserine aminotransferase OS=Nitrosomonas eur... [more]
SERC_BORPE5.293e-3353.49Phosphoserine aminotransferase OS=Bordetella pertu... [more]
SERC_BORPA1.179e-3252.71Phosphoserine aminotransferase OS=Bordetella parap... [more]
SERC_BORBR1.179e-3252.71Phosphoserine aminotransferase OS=Bordetella bronc... [more]
SERC_BURVG1.540e-3255.73Phosphoserine aminotransferase OS=Burkholderia vie... [more]
SERC_ACIF52.627e-3251.54Phosphoserine aminotransferase OS=Acidithiobacillu... [more]
SERC_ACIF22.627e-3251.54Phosphoserine aminotransferase OS=Acidithiobacillu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-596 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504108 ID=CF504108; Name=CF504108; organism=Citrus sinensis; type=EST; length=418bp
CACGATGAAAACAATTCACTTTACAATACACCGCCTTGTTATTGTATCTA
CATGTGTGGATTAGTTTTTGAGTATTTGCTAGAATTGGGTGGGTTGAATG
AAGTTGAGAAGATGAACAGGAAGAAGGCTGAATTGTTATACAACGTCATT
GACGGAAGCAACGGGTTCTATAGATGCCCAGTTGAGAAATCTGTGAGGTC
ATTCATGAATGTGCCGTTTACTCTGGAGAAGTCTGATTTGGAAGCTGAGT
TTGTGAAGGAAGCTGCTAAGGAGAAGATGGTGCAATTGAAGGGGCATAGG
TCAGTTGGAGGAATGAGGGCTTCAATATATAATGCTATGCCTTTGGCTGG
CGTTGAGAAGTTGGTTGCTTTCATGAAGGATTTCCAGGCAAAGCATGCTT
GATTTTTGCTTTAGTGTT
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