CF504110

Overview
NameCF504110
Unique NameCF504110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.356e-36
Identity = 72/95 (75.79%), Postives = 81/95 (85.26%), Query Frame = 1
Query:  139 VEKPAEGSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANS 423
            +E  +    S+YKGVRKRKWGK+VSEIRLPNSR RIWLGSYDT EKAARAFDAAL+CLRG +AKFNFPDNPP ISGGR+L  SEI+  AA+FANS
Sbjct:    1 MEGSSSSMQSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFPDNPPVISGGRNLSRSEIREAAARFANS 95          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF16_ARATH (Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana GN=ERF016 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.998e-34
Identity = 69/95 (72.63%), Postives = 80/95 (84.21%), Query Frame = 1
Query:  169 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQ 453
            +Y GVRKRKWGK+V+EIRLPNSR RIWLGS+D+AEKAARAFDAAL+CLRG  A+FNFPDNPP+I GGRSL P +IQ VA++FA  E L    PEQ
Sbjct:    6 KYTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDNPPEIPGGRSLTPQQIQVVASRFACEEEL--LPPEQ 98          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF18_ARATH (Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana GN=ERF018 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.011e-32
Identity = 70/104 (67.31%), Postives = 81/104 (77.88%), Query Frame = 1
Query:  124 MVKHAVEKPAE----GSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANS 423
            MVK A+++  +       S+YKGVRKRKWGK+VSEIRLP+SR RIWLGSYDT EKAARAFDAA FCLRG  A FNFP+NPP IS  +SL P EIQ  AA+FAN+
Sbjct:    1 MVKQAMKEEEKKRNTAMQSKYKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAFDAAQFCLRGGDANFNFPNNPPSISVEKSLTPPEIQEAAARFANT 104          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF15_ARATH (Ethylene-responsive transcription factor ERF015 OS=Arabidopsis thaliana GN=ERF015 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.026e-22
Identity = 50/87 (57.47%), Postives = 62/87 (71.26%), Query Frame = 1
Query:  172 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP-DNPPDISGG--RSLKPSEIQAVAAQFANS 423
            Y+GVRKR WGK+VSEIR+P +  RIWLGSYD  EKAARA+DAALFC+RG    +NFP D  P +  G  R L   +IQ +A  +A+S
Sbjct:   27 YRGVRKRSWGKWVSEIRVPKTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFPTDKKPQLPEGSVRPLSKLDIQTIATNYASS 113          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF12_ARATH (Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.335e-21
Identity = 58/133 (43.61%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   70 IQHHSSKSRIPIT*SPLKMVKHAVE--------KPAEGSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPD-------ISGGRSLKPSEIQAVAAQFANS 423
            IQ  S+K  +P++ SP      +          K  +    +YKGVR R WG +VSEIR PN + RIWLGSY TAE AARA+D AL CL+G  A  NFP +          +     L P  IQ VAAQ ANS
Sbjct:    8 IQTSSTKKEMPLSSSPSSSSSSSSSSSSSSCKNKNKKSKIKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFPTSSSSHHLLDNLLDENTLLSPKSIQRVAAQAANS 140          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF13_ARATH (Ethylene-responsive transcription factor ERF013 OS=Arabidopsis thaliana GN=ERF013 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.983e-21
Identity = 59/126 (46.83%), Postives = 74/126 (58.73%), Query Frame = 1
Query:   64 NSIQHHSSKSRIPIT*SPLKMVKHAVEKPAEGSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPD----NP--PDISGGRSLKPSEIQAVAAQFANS 423
            +S+ H SS S      S    ++H   +  +    +YKGVR R WG +V+EIR PN + RIWLGSY TAE AARA+DAAL CL+G  A  NFP+    +P   +I     L P  IQ VAAQ ANS
Sbjct:   15 SSLSHSSSSSS-----SSTSALRH---QSCKNKIKKYKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFPNITTTSPFLMNIDEKTLLSPKSIQKVAAQAANS 132          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.372e-20
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  172 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANS 423
            Y GVRKR+WGK+VSEIR P  ++RIWLGS+   E AA+A+D A FCL+GR A+ NFP+   D+    +  P +IQ  AA+ AN+
Sbjct:   45 YHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEIEDLPRPSTCTPRDIQVAAAKAANA 128          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.752e-20
Identity = 52/116 (44.83%), Postives = 70/116 (60.34%), Query Frame = 1
Query:   79 HSSKSRIPIT*SPLKMVKHAVEKPAEGSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNP-PDISGGRSL----KPSEIQAVAAQ 411
            +  K   P+    + M +         ++ RYKG+R RKWGK+V+EIR PN R+RIWLGSY TA  AARA+D A+F LRG SA+ NFP+    D +GG  L     P+ I+  AA+
Sbjct:    5 YKRKQEFPMVKEGMVMTEKPKRNLISSNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEEVFKDGNGGEGLGGDMSPTLIRKKAAE 120          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF14_ARATH (Ethylene-responsive transcription factor ERF014 OS=Arabidopsis thaliana GN=ERF014 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.869e-19
Identity = 52/100 (52.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  169 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA-KFNFPD---------NPPDISGGRSLKPSEIQAVAAQFANSEPLRS 438
            +YKGVR R WG +VSEIR PN + RIWLGSY TAE AARA+DAAL CL+G SA   NFP+         N  D +   S K  +  A AA  AN++P  S
Sbjct:   34 KYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANNLNFPEISTSLYHIINNGDNNNDMSPKSIQRVAAAAAAANTDPSSS 133          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.850e-18
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  163 DSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPD 345
            D  YKG+R RKWGK+V+EIR PN R+RIWLGSY T E AARA+D A+F LRG SA+ NFP+
Sbjct:   27 DKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPE 87          
The following BLAST results are available for this feature:
BLAST of CF504110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
ERF17_ARATH3.356e-3675.79Ethylene-responsive transcription factor ERF017 OS... [more]
ERF16_ARATH6.998e-3472.63Ethylene-responsive transcription factor ERF016 OS... [more]
ERF18_ARATH1.011e-3267.31Ethylene-responsive transcription factor ERF018 OS... [more]
ERF15_ARATH8.026e-2257.47Ethylene-responsive transcription factor ERF015 OS... [more]
ERF12_ARATH2.335e-2143.61Ethylene-responsive transcription factor ERF012 OS... [more]
ERF13_ARATH3.983e-2146.83Ethylene-responsive transcription factor ERF013 OS... [more]
ERF23_ARATH3.372e-2052.38Ethylene-responsive transcription factor ERF023 OS... [more]
RAP29_ARATH5.752e-2044.83Ethylene-responsive transcription factor RAP2-9 OS... [more]
ERF14_ARATH4.869e-1952.00Ethylene-responsive transcription factor ERF014 OS... [more]
RA210_ARATH1.850e-1867.21Ethylene-responsive transcription factor RAP2-10 O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-598 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504110 ID=CF504110; Name=CF504110; organism=Citrus sinensis; type=EST; length=481bp
CAAAATAAAAGCAAACAGGAATACGAGAATCATCATCCAAATCACACTCA
ATAGTTCCGAGTCAACTCGATACAGCACCACTCGTCTAAATCAAGAATAC
CCATAACCTGAAGCCCTTTAAAAATGGTGAAGCACGCAGTCGAAAAGCCT
GCTGAAGGAAGTGACTCTCGTTACAAGGGTGTCCGAAAGCGAAAGTGGGG
GAAATATGTGTCTGAAATCAGACTACCCAACAGCCGTGCCCGTATCTGGC
TGGGCTCCTACGACACAGCAGAAAAAGCAGCGCGTGCTTTCGACGCTGCT
TTGTTTTGCTTACGTGGCCGATCAGCCAAGTTTAATTTCCCGGACAACCC
ACCCGACATATCAGGCGGGCGCTCACTTAAGCCATCTGAGATTCAAGCTG
TGGCGGCTCAGTTCGCGAATTCGGAGCCGCTGAGGAGTCAATCACCAGAA
CAGTCGGTGTCCGAATTGCAAACGGAGTACT
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