CF504111 | Citrus Genome Database

Overview


Name	CF504111
Unique Name	CF504111
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	256

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig11134	contig	Csv1_Contig11134:898..1151.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB6_GOSHI (Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.756e-28
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILH+QGGQCGNQIGSKFWEVICDEHGVDPTGKY GD
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGKYNGD 39

HSP 2 Score: 46.2098 bits (108), Expect = 3.756e-28
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGGRYVPRAVLMDLEPGTM
Sbjct:   55 EASGGRYVPRAVLMDLEPGTM 75

HSP 3 Score: 30.8018 bits (68), Expect = 3.756e-28
Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = 1

Query:  121 PRGSIEVTGVEDLQLERINVYYNRS 195
            P G     G  D+QLERI+VYYN +
Sbjct:   32 PTGKYNGDGSSDIQLERIDVYYNEA 56

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_ARATH (Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.333e-27
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILH+QGGQCGNQIGSKFWEVICDEHGVDPTG+Y GD
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGD 39

HSP 2 Score: 46.2098 bits (108), Expect = 2.333e-27
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGGRYVPRAVLMDLEPGTM
Sbjct:   54 EASGGRYVPRAVLMDLEPGTM 74

HSP 3 Score: 29.261 bits (64), Expect = 2.333e-27
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 1

Query:  154 DLQLERINVYYNRS 195
            DLQLERINVYYN +
Sbjct:   42 DLQLERINVYYNEA 55

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.027e-27
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTG+Y+G
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKG 38

HSP 2 Score: 46.2098 bits (108), Expect = 3.027e-27
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGGRYVPRAVLMDLEPGTM
Sbjct:   56 EASGGRYVPRAVLMDLEPGTM 76

HSP 3 Score: 30.0314 bits (66), Expect = 3.027e-27
Identity = 15/26 (57.69%), Postives = 18/26 (69.23%), Query Frame = 1

Query:  121 PRGSIEVTGVE-DLQLERINVYYNRS 195
            P G  + T  E DLQLERINVY+N +
Sbjct:   32 PTGRYKGTAAESDLQLERINVYFNEA 57

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.027e-27
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTG+Y+G
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKG 38

HSP 2 Score: 46.2098 bits (108), Expect = 3.027e-27
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGGRYVPRAVLMDLEPGTM
Sbjct:   56 EASGGRYVPRAVLMDLEPGTM 76

HSP 3 Score: 30.0314 bits (66), Expect = 3.027e-27
Identity = 15/26 (57.69%), Postives = 18/26 (69.23%), Query Frame = 1

Query:  121 PRGSIEVTGVE-DLQLERINVYYNRS 195
            P G  + T  E DLQLERINVY+N +
Sbjct:   32 PTGRYKGTAAESDLQLERINVYFNEA 57

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_GOSHI (Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.593e-27
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEVICDEHGVD TGKY GD
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGVDNTGKYNGD 39

HSP 2 Score: 46.2098 bits (108), Expect = 8.593e-27
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGGRYVPRAVLMDLEPGTM
Sbjct:   53 EASGGRYVPRAVLMDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 8.593e-27
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB3_ORYSJ (Tubulin beta-3 chain OS=Oryza sativa subsp. japonica GN=TUBB3 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.115e-26
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TGKY GD
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGD 39

HSP 2 Score: 46.2098 bits (108), Expect = 1.115e-26
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGGRYVPRAVLMDLEPGTM
Sbjct:   53 EASGGRYVPRAVLMDLEPGTM 73

HSP 3 Score: 30.8018 bits (68), Expect = 1.115e-26
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 1

Query:  142 TGVEDLQLERINVYYNRS 195
            +G  DLQLERINVYYN +
Sbjct:   37 SGDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB7_ORYSJ (Tubulin beta-7 chain OS=Oryza sativa subsp. japonica GN=TUBB7 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.879e-26
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEVICDEHGVD TG+Y GD
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGVDATGRYAGD 39

HSP 2 Score: 46.2098 bits (108), Expect = 1.879e-26
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGGRYVPRAVLMDLEPGTM
Sbjct:   53 EASGGRYVPRAVLMDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 1.879e-26
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_ARATH (Tubulin beta-5 chain OS=Arabidopsis thaliana GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.437e-26
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIGSKFWEVICDEHG+D TG+Y GD
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD 39

HSP 2 Score: 46.2098 bits (108), Expect = 2.437e-26
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGGRYVPRAVLMDLEPGTM
Sbjct:   54 EASGGRYVPRAVLMDLEPGTM 74

HSP 3 Score: 29.261 bits (64), Expect = 2.437e-26
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 1

Query:  154 DLQLERINVYYNRS 195
            DLQLERINVYYN +
Sbjct:   42 DLQLERINVYYNEA 55

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB3_WHEAT (Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.164e-26
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TGKY GD
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDQTGKYAGD 39

HSP 2 Score: 44.669 bits (104), Expect = 3.164e-26
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGGR+VPRAVLMDLEPGTM
Sbjct:   53 EASGGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 3.164e-26
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_ORYSJ (Tubulin beta-5 chain OS=Oryza sativa subsp. japonica GN=TUBB5 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.164e-26
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TGKY GD
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGD 39

HSP 2 Score: 44.669 bits (104), Expect = 3.164e-26
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGGR+VPRAVLMDLEPGTM
Sbjct:   53 EASGGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 30.8018 bits (68), Expect = 3.164e-26
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 1

Query:  142 TGVEDLQLERINVYYNRS 195
            +G  DLQLERINVYYN +
Sbjct:   37 SGDSDLQLERINVYYNEA 54

The following BLAST results are available for this feature:

BLAST of CF504111 vs. ExPASy Swiss-Prot

BLAST of CF504111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219


Match Name	E-value	Identity	Description
TBB6_GOSHI	3.756e-28	94.87	Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV...	[more]
TBB1_ARATH	2.333e-27	92.31	Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TU...	[more]
TBB2_SOLTU	3.027e-27	94.74	Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2...	[more]
TBB1_SOLTU	3.027e-27	94.74	Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1...	[more]
TBB5_GOSHI	8.593e-27	92.31	Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV...	[more]
TBB3_ORYSJ	1.115e-26	89.74	Tubulin beta-3 chain OS=Oryza sativa subsp. japoni...	[more]
TBB7_ORYSJ	1.879e-26	89.74	Tubulin beta-7 chain OS=Oryza sativa subsp. japoni...	[more]
TBB5_ARATH	2.437e-26	89.74	Tubulin beta-5 chain OS=Arabidopsis thaliana GN=TU...	[more]
TBB3_WHEAT	3.164e-26	89.74	Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3...	[more]
TBB5_ORYSJ	3.164e-26	89.74	Tubulin beta-5 chain OS=Oryza sativa subsp. japoni...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-599 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504111 ID=CF504111; Name=CF504111; organism=Citrus sinensis; type=EST; length=256bp
CTTCGTTTCCTTTCCGTTTGAGATAAATGAGAGAGATCTTGCACATTCAA
GGAGGCCAATGCGGCAACCAAATCGGATCCAAATTCTGGGAAGTCATTTG
CGACGAGCATGGCGTGGACCCCACGGGGAAGTATAGAGGTGACCGGGGTT
GAGGATCTTCAACTGGAGCGGATCAATGTCTACTACAACCGAAGCTTCCG
GTGGAAGGTACGTGCCTCGGGCTGTTCTCATGGATCTTGAACCCGGTACC
ATGGGA