CF504116

Overview
NameCF504116
Unique NameCF504116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length443
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7055 contig Csv1_Contig7055:113..555. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504116 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.674e-28
Identity = 69/127 (54.33%), Postives = 83/127 (65.35%), Query Frame = 2
Query:   62 MKGGRSKADAVGTDSKLKSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKS 442
            MKGG+SKA +   D+KL  K  +A                    SAFFVFME+FRK +KE HPNNKSVA VGKA G+KWK ++  EKAPF+ +AEKRK +Y KN+Q YNK+ A G  AAEE ESDKS
Sbjct:    1 MKGGKSKAKS---DNKLAVK-KQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEEEESDKS 121          
BLAST of CF504116 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.561e-28
Identity = 64/131 (48.85%), Postives = 82/131 (62.60%), Query Frame = 2
Query:   62 MKGGRSKADAVGTDSKL----KSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKS 442
            MKGG+SK ++   D KL    K    +A K                  SAFFVFMEEFRK F + HP NK+V+ VGKAAG KWK+MS+ EKAP+V ++EKRK +Y KNM+ YNK+ A+G    +E ES+KS
Sbjct:    1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKS 131          
BLAST of CF504116 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.511e-26
Identity = 63/132 (47.73%), Postives = 86/132 (65.15%), Query Frame = 2
Query:   62 MKGGRSKADAVGTDSKL--KSKGARA---GKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKS 442
            MKGG+SK ++   ++KL    KGA A   GK+                 SAFFVFM +FR+Q+K+ HPNNKSVA VGKA GE+WKS+SE+EKAP+V+RA K+K +Y   +Q YNK+L +G +  E ++  KS
Sbjct:    1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKL-EGKDDEEGSDKSKS 131          
BLAST of CF504116 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.794e-24
Identity = 66/137 (48.18%), Postives = 81/137 (59.12%), Query Frame = 2
Query:   62 MKGGRSKADAVGTDSKL--KSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAA--------EENESDKS 442
            MKG +SK  A   D+KL  KSKGA    +                 SAFFVFMEEFRK+FKE +P NKSVA VGKAAG++WKS+SE +KAP+V +A K K +YNK +  YNK  +     A        +E ESDKS
Sbjct:    1 MKGAKSKG-AAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKS 136          
BLAST of CF504116 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 7.536e-23
Identity = 66/141 (46.81%), Postives = 81/141 (57.45%), Query Frame = 2
Query:   62 MKGGRSKADAVGTDSKL--KSKGA-RAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN-----------KQLADGVNAAEENESDKS 442
            MKG +SK  A   D+KL  KSKGA +   +                 SAFFVFM EFR++FK+ +P NKSVA VGKAAGE+WKS+SE EKAP+V +A K K +YNK +  YN           K  A  V   +E ESDKS
Sbjct:    1 MKGAKSKG-AAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGESAAAAAPKKAAAKEVEEEDEEESDKS 140          
BLAST of CF504116 vs. ExPASy Swiss-Prot
Match: HMGB3_BOVIN (High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 45/132 (34.09%), Postives = 65/132 (49.24%), Query Frame = 2
Query:   77 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVNAA---------EENESDK 439
            +KAD V  D ++K  G A+ GK+                 S FF+F  EFR + K A+P   S+  V K  GE W ++S+ EK P++ +A K K  Y K++ DY +K   DG   A         EE+E D+
Sbjct:   64 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKGKFDGAKGAAKVARKKVEEEDEEDE 188          
The following BLAST results are available for this feature:
BLAST of CF504116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
HMGL_IPONI2.674e-2854.33HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_SOYBN4.561e-2848.85HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_VICFA9.511e-2647.73HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
MNB1B_MAIZE1.794e-2448.18DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT7.536e-2346.81HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
HMGB3_BOVIN5.067e-1134.09High mobility group protein B3 OS=Bos taurus GN=HM... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-604 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504116 ID=CF504116; Name=CF504116; organism=Citrus sinensis; type=EST; length=443bp
CACGCACGAACAAAGCATATCCTTTTGTCTTCCAAAAACCCTAACCTCTC
CAGGATTCATCATGAAAGGAGGCAGATCGAAAGCTGACGCCGTAGGAACT
GATAGCAAGCTGAAGAGCAAAGGGGCGAGAGCCGGCAAGCGAACAGCGAA
GCCCAAGGCTGCGAAAGATCCAAACAAGCCGAAGAGGCCTCCTAGTGCTT
TCTTCGTTTTCATGGAGGAGTTCAGGAAGCAGTTCAAAGAAGCTCATCCT
AACAATAAATCTGTTGCTACTGTTGGCAAAGCTGCTGGAGAAAAATGGAA
GTCAATGTCAGAAGATGAGAAAGCGCCATTCGTTGAAAGGGCTGAGAAAA
GAAAGTCTGATTACAACAAGAACATGCAGGATTACAACAAGCAGTTGGCT
GATGGAGTAAATGCTGCTGAGGAAAATGAATCTGACAAGTCCA
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