CF504125
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF504125 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 9.153e-41 Identity = 78/108 (72.22%), Postives = 92/108 (85.19%), Query Frame = 3 Query: 87 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQST 407 +GTR+ P I+ SGR A FGFGK+K APKKS + + ++DRPLWYPGA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN AGD+IGTR EA+D +ST Sbjct: 15 MGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKST 122
BLAST of CF504125 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 1.616e-37 Identity = 77/108 (71.30%), Postives = 90/108 (83.33%), Query Frame = 3 Query: 87 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQST 407 +GTR+ DI SNS R ARFGFG +K +PKK+K + SDRPLW+PGAK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN G++IGTR EA D +ST Sbjct: 14 MGTRVVSDISSNSSRFTARFGFGTKKASPKKAK--TVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKST 119
BLAST of CF504125 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 3.725e-34 Identity = 70/110 (63.64%), Postives = 84/110 (76.36%), Query Frame = 3 Query: 90 GTRLPDIYSNSGRIQARFGF--GKRKTAP--KKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQST 407 G R+ D +GR+QARFGF GK+K AP KKS+Q DR +W+PGA PEWLDGS++GD GFDPFGLGKPAEYLQYD+D LDQNLAKN AGDIIG E+S+++ T Sbjct: 14 GIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPT 123
BLAST of CF504125 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 6.836e-12 Identity = 35/76 (46.05%), Postives = 41/76 (53.95%), Query Frame = 3 Query: 156 RKTAPKKSKQSSGSSDRP-----LWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDI 368 +K A +S G R LW P PEWLDGSL GD GFDP GL KP+E++ D DQN AKN G + Sbjct: 29 KKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSV 104
BLAST of CF504125 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.787e-11 Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 3 Query: 123 GRIQARFGFGKRKT-----APKKSKQSSGSS-----DRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYD 320 G +A F GKR AP S+ + S+ DRPLW+PG+ PEWLDGSL GD+GFDP GLG E L+++ Sbjct: 28 GATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWN 103 The following BLAST results are available for this feature:
BLAST of CF504125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF504125 ID=CF504125; Name=CF504125; organism=Citrus sinensis; type=EST; length=408bpback to top |