CF504125

Overview
NameCF504125
Unique NameCF504125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length408
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504125_ssr58 microsatellite CF504125_ssr58:58..69. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:33..440. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504125 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.153e-41
Identity = 78/108 (72.22%), Postives = 92/108 (85.19%), Query Frame = 3
Query:   87 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQST 407
            +GTR+ P I+  SGR  A FGFGK+K APKKS + + ++DRPLWYPGA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN AGD+IGTR EA+D +ST
Sbjct:   15 MGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKST 122          
BLAST of CF504125 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.616e-37
Identity = 77/108 (71.30%), Postives = 90/108 (83.33%), Query Frame = 3
Query:   87 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQST 407
            +GTR+  DI SNS R  ARFGFG +K +PKK+K  +  SDRPLW+PGAK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN  G++IGTR EA D +ST
Sbjct:   14 MGTRVVSDISSNSSRFTARFGFGTKKASPKKAK--TVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKST 119          
BLAST of CF504125 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.725e-34
Identity = 70/110 (63.64%), Postives = 84/110 (76.36%), Query Frame = 3
Query:   90 GTRLPDIYSNSGRIQARFGF--GKRKTAP--KKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQST 407
            G R+ D    +GR+QARFGF  GK+K AP  KKS+Q     DR +W+PGA  PEWLDGS++GD GFDPFGLGKPAEYLQYD+D LDQNLAKN AGDIIG   E+S+++ T
Sbjct:   14 GIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPT 123          
BLAST of CF504125 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.836e-12
Identity = 35/76 (46.05%), Postives = 41/76 (53.95%), Query Frame = 3
Query:  156 RKTAPKKSKQSSGSSDRP-----LWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDI 368
            +K A     +S G   R      LW P    PEWLDGSL GD GFDP GL KP+E++    D  DQN AKN  G +
Sbjct:   29 KKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSV 104          
BLAST of CF504125 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.787e-11
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 3
Query:  123 GRIQARFGFGKRKT-----APKKSKQSSGSS-----DRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYD 320
            G  +A F  GKR       AP  S+  + S+     DRPLW+PG+  PEWLDGSL GD+GFDP GLG   E L+++
Sbjct:   28 GATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWN 103          
The following BLAST results are available for this feature:
BLAST of CF504125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CB4A_ARATH9.153e-4172.22Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH1.616e-3771.30Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH3.725e-3463.64Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE6.836e-1246.05Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB12_PETHY5.787e-1147.37Chlorophyll a-b binding protein, chloroplastic OS=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-613 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504125 ID=CF504125; Name=CF504125; organism=Citrus sinensis; type=EST; length=408bp
TTTCAATCAACACTACACACCCCACCGTAAGTTAGCCACAAGCCATGGCC
TCAACCACAGCAGCAGCAGCCGCCACATCATCTTTCATTGGCACCCGCCT
CCCCGACATTTACTCAAACTCGGGCCGTATCCAAGCCCGGTTCGGCTTCG
GAAAGAGAAAAACAGCACCCAAAAAGTCGAAACAGTCTTCCGGATCCTCT
GATCGTCCACTTTGGTACCCAGGAGCCAAGGCACCCGAGTGGCTCGACGG
GAGCTTGGTGGGTGACTACGGGTTCGACCCGTTCGGGCTGGGCAAGCCAG
CGGAGTACTTGCAGTATGACTATGACTCGTTGGACCAGAACTTGGCTAAG
AACCCGGCTGGCGATATTATTGGGACGAGGATTGAGGCCTCTGACATGCA
GTCCACGC
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