CF504151
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504151 vs. ExPASy Swiss-Prot
Match: IMP4_RAT (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus GN=Imp4 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.099e-30 Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 2 Query: 71 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRG 421 MLRR RLRREYLYRK+ E +R + EKK ++K AL+E + IPTELR E AL+ ++ +D SH+DDEY A DPK+++TTSRDPS+ L F KELK VFP AQRMNRG Sbjct: 1 MLRREARLRREYLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRG 117
BLAST of CF504151 vs. ExPASy Swiss-Prot
Match: IMP4_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus GN=Imp4 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.099e-30 Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 2 Query: 71 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRG 421 MLRR RLRREYLYRK+ E +R + EKK ++K AL+E + IPTELR E AL+ ++ +D SH+DDEY A DPK+++TTSRDPS+ L F KELK VFP AQRMNRG Sbjct: 1 MLRREARLRREYLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRG 117
BLAST of CF504151 vs. ExPASy Swiss-Prot
Match: IMP4_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus GN=IMP4 PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 4.177e-30 Identity = 65/117 (55.56%), Postives = 81/117 (69.23%), Query Frame = 2 Query: 71 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRG 421 MLRR RLRREYLYRK+ E ER E+K K++ AL+E + IPTELR E AL+ ++ +D +H+DDEY A DPK+++TTSRDPS+ L F KELK VFP AQRMNRG Sbjct: 1 MLRREARLRREYLYRKAREEAERTAQERKDKVRRALEENRLIPTELRREALALQGSLEFDDAGGEGVTNHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRG 117
BLAST of CF504151 vs. ExPASy Swiss-Prot
Match: IMP4_PONAB (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii GN=IMP4 PE=2 SV=2) HSP 1 Score: 128.642 bits (322), Expect = 9.306e-30 Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 2 Query: 71 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRG 421 MLRR RLRREYLYRK+ E +R E+K +++ AL+E + IPTELR E AL+ ++ +D SH+DDEY A DPK+++TTSRDPS+ L F KELK VFP AQRMNRG Sbjct: 1 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRG 117
BLAST of CF504151 vs. ExPASy Swiss-Prot
Match: IMP4_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens GN=IMP4 PE=1 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 9.306e-30 Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 2 Query: 71 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRG 421 MLRR RLRREYLYRK+ E +R E+K +++ AL+E + IPTELR E AL+ ++ +D SH+DDEY A DPK+++TTSRDPS+ L F KELK VFP AQRMNRG Sbjct: 1 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRG 117
BLAST of CF504151 vs. ExPASy Swiss-Prot
Match: IMP4_YEAST (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces cerevisiae GN=IMP4 PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 2.900e-23 Identity = 59/121 (48.76%), Postives = 82/121 (67.77%), Query Frame = 2 Query: 71 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAA---LRQEIDLEDENTAIPRSHIDDEYANATE-RDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRG 421 MLRR R RREYLYRK+ E ++ L +K++ IK+AL +GKP+P EL +E+ R + L++ A +DDEYA + DP+I++TTSRDPS L+QF KE+K +FPNA R+NRG Sbjct: 1 MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQSLKESEEA-DDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRG 120
BLAST of CF504151 vs. ExPASy Swiss-Prot
Match: YHPK_CAEEL (Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans GN=ZK795.3 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 4.187e-22 Identity = 55/117 (47.01%), Postives = 75/117 (64.10%), Query Frame = 2 Query: 71 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRG 421 M+RR RLRRE+++RKSLE K++ L EK+ KI+ AL+ I LR + L + D + + D EY A +DPKI++TTSRDPS+ L F KE+K +FPNAQR+NRG Sbjct: 1 MIRRENRLRREFIFRKSLEEKQKSLEEKREKIRNALENNTKIDYNLRKDAIELAKGSDWGGQ-----QYETDSEYRWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRG 112
BLAST of CF504151 vs. ExPASy Swiss-Prot
Match: IMP4_DEBHA (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Debaryomyces hansenii GN=IMP4 PE=3 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 1.218e-21 Identity = 57/118 (48.31%), Postives = 78/118 (66.10%), Query Frame = 2 Query: 71 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEY-ANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRG 421 M+R+ R RREYLYRKSLE +E L EK++++K AL GKP+ EL ++ + I E E T IDDEY A + +PK+L+TTSR+PS L QF KE+K +FPN+ ++NRG Sbjct: 1 MIRKQARERREYLYRKSLELQESSLTEKRQQLKAALASGKPLSKELAEDKELQKDFIYDESEQT-----EIDDEYSALSGISEPKVLITTSRNPSVKLLQFSKEIKLMFPNSIKLNRG 113
BLAST of CF504151 vs. ExPASy Swiss-Prot
Match: IMP4_YARLI (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia lipolytica GN=IMP4 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 1.591e-21 Identity = 55/118 (46.61%), Postives = 81/118 (68.64%), Query Frame = 2 Query: 71 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEY-ANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRG 421 M+RR R RREYLYRKSL+ +E +K++++K AL GKP+P ++ ++E LR+ I ++ + IDDEY A + DPK+++TTSRDPS L+QF KE+K +FP + R+NRG Sbjct: 1 MIRRQARERREYLYRKSLQLQEATKIQKRQQLKAALASGKPLPKDVADDE-ELRKTIAYDES----VQDEIDDEYSAMSGITDPKVVVTTSRDPSTRLSQFAKEVKLLFPTSIRLNRG 113
BLAST of CF504151 vs. ExPASy Swiss-Prot
Match: IMP4_CANGA (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida glabrata GN=IMP4 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 1.591e-21 Identity = 58/124 (46.77%), Postives = 81/124 (65.32%), Query Frame = 2 Query: 71 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALR------QEIDLEDENTAIPRSHIDDEY-ANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRG 421 MLRR R RREYLYRK+ E +E L +K++ IK+AL +GKP+P EL +E + D EDE + +DDEY A++ + ++++TTSRDPS+ L QF KE+K +FPNA R+NRG Sbjct: 1 MLRRQARERREYLYRKAQELQETQLQQKRQIIKQALAQGKPLPKELAEDEQLQKDFRYDQSMADNEDE------AGVDDEYSASSGIVEARVIVTTSRDPSSRLAQFAKEIKLLFPNAVRLNRG 118 The following BLAST results are available for this feature:
BLAST of CF504151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504151 ID=CF504151; Name=CF504151; organism=Citrus sinensis; type=EST; length=423bpback to top |