CF504155

Overview
NameCF504155
Unique NameCF504155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length276
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504155_ssr1 microsatellite CF504155_ssr1:1..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11542 contig Csv1_Contig11542:30..305. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP83_ORYSJ (Heat shock protein 81-3 OS=Oryza sativa subsp. japonica GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.167e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 2
Query:   92 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ 274
            MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ
Sbjct:    1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ 61          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP82_ORYSJ (Heat shock protein 81-2 OS=Oryza sativa subsp. japonica GN=HSP81-2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.167e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 2
Query:   92 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ 274
            MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ
Sbjct:    1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ 61          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSJ (Heat shock protein 81-1 OS=Oryza sativa subsp. japonica GN=HSP81-1 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.167e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 2
Query:   92 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ 274
            MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ
Sbjct:    1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ 61          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSI (Heat shock protein 81-1 OS=Oryza sativa subsp. indica GN=HSP81-1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.167e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 2
Query:   92 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ 274
            MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ
Sbjct:    1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ 61          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP83_IPONI (Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.518e-24
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 2
Query:   98 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ 274
            +E ETFAFQAEINQLLSLIINTFYSNKEIFLRELISN+SDALDKIRFESLTDKSKLDAQ
Sbjct:    7 AEAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSKLDAQ 65          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP80_SOLLC (Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.900e-24
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 2
Query:   98 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ 274
            S+ ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLD Q
Sbjct:    2 SDVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQ 60          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP83_ARATH (Heat shock protein 81-3 OS=Arabidopsis thaliana GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.314e-23
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 2
Query:   98 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ 274
            ++ ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLD Q
Sbjct:    2 ADAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQ 60          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP82_ARATH (Heat shock protein 81-2 OS=Arabidopsis thaliana GN=HSP81-2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.314e-23
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 2
Query:   98 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ 274
            ++ ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLD Q
Sbjct:    2 ADAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQ 60          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP81_ARATH (Heat shock protein 81-1 OS=Arabidopsis thaliana GN=HSP81-1 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 1.314e-23
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 2
Query:   98 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ 274
            ++ ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLD Q
Sbjct:    2 ADAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQ 60          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP82_MAIZE (Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.824e-23
Identity = 54/59 (91.53%), Postives = 58/59 (98.31%), Query Frame = 2
Query:   98 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ 274
            +ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISN+SDALDKIRFESLTDKS ++AQ
Sbjct:   12 AETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSNVNAQ 70          
The following BLAST results are available for this feature:
BLAST of CF504155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 286
Match NameE-valueIdentityDescription
HSP83_ORYSJ2.167e-26100.00Heat shock protein 81-3 OS=Oryza sativa subsp. jap... [more]
HSP82_ORYSJ2.167e-26100.00Heat shock protein 81-2 OS=Oryza sativa subsp. jap... [more]
HSP81_ORYSJ2.167e-26100.00Heat shock protein 81-1 OS=Oryza sativa subsp. jap... [more]
HSP81_ORYSI2.167e-26100.00Heat shock protein 81-1 OS=Oryza sativa subsp. ind... [more]
HSP83_IPONI4.518e-2494.92Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=... [more]
HSP80_SOLLC5.900e-2494.92Heat shock cognate protein 80 OS=Solanum lycopersi... [more]
HSP83_ARATH1.314e-2393.22Heat shock protein 81-3 OS=Arabidopsis thaliana GN... [more]
HSP82_ARATH1.314e-2393.22Heat shock protein 81-2 OS=Arabidopsis thaliana GN... [more]
HSP81_ARATH1.314e-2393.22Heat shock protein 81-1 OS=Arabidopsis thaliana GN... [more]
HSP82_MAIZE3.824e-2391.53Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-643 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504155 ID=CF504155; Name=CF504155; organism=Citrus sinensis; type=EST; length=276bp
CTCTCTCTCTCTCTGTCTCTCGTTCGCTTCCAAAACCCCTAGTTTATAAT
TCAGAAGAGATCGTTTTTTGGTTGAACGGCAGGTCGTTTCGATGGCATCA
GAGACAGAGACGTTTGCCTTTCAGGCTGAGATCAACCAGTTGTTGAGTTT
GATCATCAACACCTTTTACAGCAACAAGGAGATCTTTCTTCGTGAGCTCA
TCAGCAACTCCTCCGATGCATTGGATAAGATCAGATTTGAAAGCTTGACA
GACAAGAGCAAGCTAGATGCCCAACC
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