CF504158

Overview
NameCF504158
Unique NameCF504158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:18..390. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504158 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSJ (Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 4.893e-47
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 2 
Query:  113 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 373
            DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH
Sbjct:    3 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 89
[Close]
BLAST of CF504158 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSI (Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 4.893e-47
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 2 
Query:  113 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 373
            DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH
Sbjct:    3 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 89
[Close]
BLAST of CF504158 vs. ExPASy Swiss-Prot
Match: ACT1_SORBI (Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 4.893e-47
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 2 
Query:  113 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 373
            DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH
Sbjct:    3 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 89
[Close]
BLAST of CF504158 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSJ (Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 4.893e-47
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 2 
Query:  113 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 373
            DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH
Sbjct:    3 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 89
[Close]
BLAST of CF504158 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSI (Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 4.893e-47
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 2 
Query:  113 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 373
            DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH
Sbjct:    3 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 89
[Close]
BLAST of CF504158 vs. ExPASy Swiss-Prot
Match: ACT13_SOLTU (Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.090e-46
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 2 
Query:  113 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 373
            DAEDI+PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH
Sbjct:    3 DAEDIEPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 89
[Close]
BLAST of CF504158 vs. ExPASy Swiss-Prot
Match: ACT7_ARATH (Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.424e-46
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 2 
Query:  113 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 373
            D EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH
Sbjct:    3 DGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 89
[Close]
BLAST of CF504158 vs. ExPASy Swiss-Prot
Match: ACT3_PEA (Actin-3 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.424e-46
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 2 
Query:  113 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 373
            +AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH
Sbjct:    3 EAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 89
[Close]
BLAST of CF504158 vs. ExPASy Swiss-Prot
Match: ACT1_TOBAC (Actin OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.424e-46
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 2 
Query:  113 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 373
            D EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH
Sbjct:    3 DGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 89
[Close]
BLAST of CF504158 vs. ExPASy Swiss-Prot
Match: ACT11_ARATH (Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.424e-46
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 2 
Query:  113 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 373
            D EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH
Sbjct:    3 DGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 89
The following BLAST results are available for this feature:
BLAST of CF504158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
ACT2_ORYSJ4.893e-47100.00Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE... [more]
ACT2_ORYSI4.893e-47100.00Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3... [more]
ACT1_SORBI4.893e-47100.00Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1[more]
ACT1_ORYSJ4.893e-47100.00Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE... [more]
ACT1_ORYSI4.893e-47100.00Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2... [more]
ACT13_SOLTU1.090e-4698.85Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1[more]
ACT7_ARATH1.424e-4698.85Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1[more]
ACT3_PEA1.424e-4698.85Actin-3 OS=Pisum sativum PE=2 SV=1[more]
ACT1_TOBAC1.424e-4698.85Actin OS=Nicotiana tabacum PE=3 SV=1[more]
ACT11_ARATH1.424e-4698.85Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-646 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504158 ID=CF504158; Name=CF504158; organism=Citrus sinensis; type=EST; length=374bp
CTCGGCAGTACCAAATACAGAGCGATAGAGAGAATCGACACTCTCAGCTA
GACTCCATCTTCGAATTTTTCTCTCGTCGTCTCTTCAATCTAACTTTTAT
AAAAAATGGCCCGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGG
AACTGGAATGGTGAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCAG
TATTCCCTAGTATTGTTGGTAGGCCTCGACACACTGGAGTCATGGTTGGA
ATGGGGCAGAAGGATGCCTATGTTGGTGATGAGGCCCAATCGAAAAGAGG
TATTCTTACTTTGAAATACCCAATTGAGCACGGTATTGTAAGCAACTGGG
ATGATATGGAAAAGATCTGGCATC
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