CF504161

Overview
NameCF504161
Unique NameCF504161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length345
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10194 contig Csv1_Contig10194:166..510. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504161 vs. ExPASy Swiss-Prot
Match: IF41_WHEAT (Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 50/128 (39.06%), Postives = 70/128 (54.69%), Query Frame = 2
Query:    5 ERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQA------RYLEADNRDWRTR-----STTSGQEKSLEANQEKME----FGAHEGQLNSQFASAQISTNQGAGPA 343
            ERVRY+R+QLL L+++  +TE IL+++QEIE+E +G+ QSW     N  LQ+Q Q       R+ E DNRDWR R     +    +EKS +  +E  E     G  + Q N Q  S+      G  PA
Sbjct:   62 ERVRYSRDQLLDLRKITDVTEQILRLQQEIEAELNGDDQSWVRNDSNVQLQTQAQPQVQAQNRFTETDNRDWRARTEKPPAPAVQEEKSWDNIREVKEQYNASGRQQEQFNRQDQSSSQKAQVGPPPA 189          
The following BLAST results are available for this feature:
BLAST of CF504161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IF41_WHEAT2.224e-1539.06Eukaryotic initiation factor iso-4F subunit p82-34... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-649 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504161 ID=CF504161; Name=CF504161; organism=Citrus sinensis; type=EST; length=345bp
TCATGAACGTGTTCGATACACCCGAGAGCAGCTGTTACAACTTAAGGAGG
TTGCTCAACTAACTGAAGACATTTTGAAGATAAAGCAAGAAATTGAGTCT
GAGTTTGATGGCGAAGGTCAAAGCTGGGGTGGTCGTGCAGAAAATAACAA
TCTGCAATCTCAATTCCAAGCTCGTTACTTGGAGGCAGACAATCGTGATT
GGCGTACTCGATCAACCACCTCTGGACAAGAGAAATCCTTGGAAGCAAAT
CAAGAAAAGATGGAATTTGGTGCTCATGAGGGCCAACTTAATTCCCAGTT
CGCAAGTGCTCAAATCTCCACTAACCAAGGGGCAGGACCTGCTCC
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