CF504162

Overview
NameCF504162
Unique NameCF504162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9584 contig Csv1_Contig9584:74..484. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 1.261e-58
Identity = 111/117 (94.87%), Postives = 115/117 (98.29%), Query Frame = 1
Query:   61 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE+D LM +VANPRQFKIPDWFLNRQKDYKDG+YSQVVSNALDMKLRDDLERLKKI
Sbjct:    1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKI 117          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.480e-47
Identity = 86/117 (73.50%), Postives = 107/117 (91.45%), Query Frame = 1
Query:   61 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            MSLV  E FQHILRV+NTN+DG++KIMFALTSIKG+GRR +NIVCKKAD+D++KRAGELS  E+++L+ ++ NPRQ+KIPDWFLNRQKD KDG+YSQV++N+LD KLR+DLERLKKI
Sbjct:    1 MSLVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKI 117          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.208e-46
Identity = 84/117 (71.79%), Postives = 107/117 (91.45%), Query Frame = 1
Query:   61 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            M+L+  E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR AN+VCKKADVD+ KRAGELS  E+++++ +++NPRQ+KIP+WFLNRQKD KDG+YSQV+SNALD KLR+DLERLKKI
Sbjct:    1 MALIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKI 117          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.146e-43
Identity = 80/117 (68.38%), Postives = 104/117 (88.89%), Query Frame = 1
Query:   61 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+NKRAGEL+  E+++++ ++ NPRQ+KIPDWFLNRQKD KDG+YSQV++N LD KLR+DLERLKKI
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKI 117          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_CHLRE (40S ribosomal protein S18 OS=Chlamydomonas reinhardtii GN=RPS18 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.335e-43
Identity = 81/116 (69.83%), Postives = 101/116 (87.07%), Query Frame = 1
Query:   64 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            SLV  +DFQHILR+LNTNVDGK KIM+A+T+I+GIGRR +N+VCKKA+VD+ K AGE SA EL+++M +VANPR +KIPDWFLNRQKD+K GR+SQ+ S+ LD  +RDDLERLKKI
Sbjct:    3 SLVQGDDFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKAAGECSADELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKI 118          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.355e-43
Identity = 79/117 (67.52%), Postives = 104/117 (88.89%), Query Frame = 1
Query:   61 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D++KRAGEL+  E+++++ ++ NPRQ+KIPDWFLNRQKD KDG+YSQV++N LD KLR+DLERLKKI
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKI 117          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 5.688e-43
Identity = 79/117 (67.52%), Postives = 103/117 (88.03%), Query Frame = 1
Query:   61 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E+++++ ++ NPRQ+KIPDWFLNRQKD KDG+YSQV++N LD KLR+DLERLKKI
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKI 117          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 5.688e-43
Identity = 79/117 (67.52%), Postives = 103/117 (88.03%), Query Frame = 1
Query:   61 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E+++++ ++ NPRQ+KIPDWFLNRQKD KDG+YSQV++N LD KLR+DLERLKKI
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKI 117          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 5.688e-43
Identity = 79/117 (67.52%), Postives = 103/117 (88.03%), Query Frame = 1
Query:   61 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E+++++ ++ NPRQ+KIPDWFLNRQKD KDG+YSQV++N LD KLR+DLERLKKI
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKI 117          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 5.688e-43
Identity = 79/117 (67.52%), Postives = 103/117 (88.03%), Query Frame = 1
Query:   61 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E+++++ ++ NPRQ+KIPDWFLNRQKD KDG+YSQV++N LD KLR+DLERLKKI
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKI 117          
The following BLAST results are available for this feature:
BLAST of CF504162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RS18_ARATH1.261e-5894.8740S ribosomal protein S18 OS=Arabidopsis thaliana ... [more]
RS18_BRABE8.480e-4773.5040S ribosomal protein S18 OS=Branchiostoma belcher... [more]
RS18_AEQIR4.208e-4671.7940S ribosomal protein S18 OS=Aequipecten irradians... [more]
RS18_DANRE1.146e-4368.3840S ribosomal protein S18 OS=Danio rerio GN=rps18 ... [more]
RS18_CHLRE3.335e-4369.8340S ribosomal protein S18 OS=Chlamydomonas reinhar... [more]
RS18_ICTPU4.355e-4367.5240S ribosomal protein S18 OS=Ictalurus punctatus G... [more]
RS18_RAT5.688e-4367.5240S ribosomal protein S18 OS=Rattus norvegicus GN=... [more]
RS18_PIG5.688e-4367.5240S ribosomal protein S18 OS=Sus scrofa GN=RPS18 P... [more]
RS18_MOUSE5.688e-4367.5240S ribosomal protein S18 OS=Mus musculus GN=Rps18... [more]
RS18_HUMAN5.688e-4367.5240S ribosomal protein S18 OS=Homo sapiens GN=RPS18... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-650 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504162 ID=CF504162; Name=CF504162; organism=Citrus sinensis; type=EST; length=411bp
AGAAGGCGAAGGCACAAAAGTCAACCATAAAGGAAAAAAGAGAAACGAAC
ATCTCCAGCCATGTCTCTGGTAGCCAACGAGGATTTTCAACACATTCTTC
GTGTTCTGAACACGAATGTTGATGGGAAACAAAAGATCATGTTTGCTCTC
ACATCCATTAAGGGTATCGGTCGCCGTTTGGCCAATATTGTCTGCAAGAA
AGCTGATGTCGACATGAACAAAAGAGCTGGTGAGCTCTCTGCCGCTGAGC
TTGACCAACTGATGGTGGTTGTGGCAAATCCACGCCAGTTTAAGATCCCA
GACTGGTTTCTTAACAGGCAAAAGGATTACAAGGATGGGAGGTACTCCCA
GGTCGTGTCTAATGCATTGGACATGAAGCTTAGGGATGATCTTGAGCGCT
TGAAGAAGATC
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