CF504166

Overview
NameCF504166
Unique NameCF504166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:1170..1643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 1.316e-37
Identity = 76/79 (96.20%), Postives = 79/79 (100.00%), Query Frame = -3 
Query:  236 VKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 472
            VKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  358 VKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436
[Close]
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.316e-37
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = -3 
Query:  236 VKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 472
            VKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  358 VKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.931e-37
Identity = 74/79 (93.67%), Postives = 79/79 (100.00%), Query Frame = -3 
Query:  236 VKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 472
            VKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  358 VKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.931e-37
Identity = 74/79 (93.67%), Postives = 79/79 (100.00%), Query Frame = -3 
Query:  236 VKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 472
            VKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  358 VKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.114e-36
Identity = 74/79 (93.67%), Postives = 78/79 (98.73%), Query Frame = -3 
Query:  236 VKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 472
            VKF+EL+TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  358 VKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436
[Close]
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.455e-36
Identity = 73/79 (92.41%), Postives = 78/79 (98.73%), Query Frame = -3 
Query:  236 VKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 472
            VKFSE++TKIDRRSGKE+EKEPKFLKNGDAGMVKM PTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKSV+KKDPTG
Sbjct:  358 VKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTG 436
[Close]
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.900e-36
Identity = 72/79 (91.14%), Postives = 79/79 (100.00%), Query Frame = -3 
Query:  236 VKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 472
            VKF+E++TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+V+KKDPTG
Sbjct:  358 VKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDPTG 436
[Close]
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.240e-36
Identity = 71/79 (89.87%), Postives = 79/79 (100.00%), Query Frame = -3 
Query:  236 VKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 472
            VKF+E++TKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGV+K+V+KKDPTG
Sbjct:  358 VKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVVKNVDKKDPTG 436
[Close]
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.219e-36
Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = -3 
Query:  236 VKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 472
            VKF+E++TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIKSVEKKDP+G
Sbjct:  358 VKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSG 436
[Close]
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.231e-35
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = -3 
Query:  236 VKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 472
            VKF+E+ TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  358 VKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
The following BLAST results are available for this feature:
BLAST of CF504166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
EF1A_ORYSJ1.316e-3796.20Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_MAIZE1.316e-3796.20Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_VICFA2.931e-3793.67Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_PEA2.931e-3793.67Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_SOYBN1.114e-3693.67Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_ARATH1.455e-3692.41Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_TOBAC1.900e-3691.14Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_SOLLC3.240e-3689.87Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_MANES7.219e-3692.41Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A2_DAUCA1.231e-3592.41Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-654 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504166 ID=CF504166; Name=CF504166; organism=Citrus sinensis; type=EST; length=474bp
CCAAATTCAGAATATAAAAATCCGAACACCCACCACAGCCAGTTAAGCAG
AAAGATAACATCCCAATTGCTCAACAGCAAACTGGTGGAAGCAAATAGGG
CTGTTTGCAGAAACATTGATGCAAAACAAAAACAGACAAGAAAATAAAAA
AAGACAGAAAATAAACCCTAACTATTGTAGACAGACCCATAAAAATTTCT
CATTTCTTCTTGGCTGCGGACTTGGTGACCTTCGCACCTGTGGGATCCTT
CTTCTCAACACTCTTGATAACACCCACAGCAACAGTCTGACGCATGTCCC
TAACAGCAAAACGACCAAGGGGTGGGTAATCGGAGAAGGTTTCAACAACC
ATGGGCTTGGTGGGAATCATCTTAACCATTCCGGCGTCTCCATTCTTCAA
GAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCG
TCACGAGCTCAGAAAACTTGACGG
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