CF504168

Overview
NameCF504168
Unique NameCF504168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504168_ssr85 microsatellite CF504168_ssr85:85..96. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1768 contig Csv1_Contig1768:80..463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504168 vs. ExPASy Swiss-Prot
Match: YAB3_ARATH (Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.416e-25
Identity = 57/82 (69.51%), Postives = 67/82 (81.71%), Query Frame = 3
Query:  144 MSSSTPAALSPDHLSSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLS--VNMRGLLLPAANQLHLGHPFFTP 383
            MSSS+  A  PDH SS++QLCYVHC+FCDTVLAVSVP +SLFKTVTVRCGHC+NLLS  V+MR LLLP+ +  +LGH F  P
Sbjct:    6 MSSSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVS--NLGHSFLPP 85          
BLAST of CF504168 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSJ (Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.850e-25
Identity = 59/95 (62.11%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  144 MSSSTPAALSPDHLSS-----------SEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPA----ANQLHLGHPFFTP 383
            M SS P   S DHLS             EQLCYVHC FCDT+LAV VPC+SLFKTVTVRCGHC NLLSVN+RGLLLPA    ANQL  G    +P
Sbjct:    1 MMSSAPETFSLDHLSQHQQQQPPPLAEQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSP 95          
BLAST of CF504168 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSI (Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.850e-25
Identity = 59/95 (62.11%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  144 MSSSTPAALSPDHLSS-----------SEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPA----ANQLHLGHPFFTP 383
            M SS P   S DHLS             EQLCYVHC FCDT+LAV VPC+SLFKTVTVRCGHC NLLSVN+RGLLLPA    ANQL  G    +P
Sbjct:    1 MMSSAPETFSLDHLSQHQQQQPPPLAEQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSP 95          
BLAST of CF504168 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSJ (Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.850e-25
Identity = 58/87 (66.67%), Postives = 64/87 (73.56%), Query Frame = 3
Query:  147 SSSTPAALSPDHL---SSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPA-----ANQLHLGHPFFTP 383
            SSS+ A    DHL   S +EQLCYVHC  CDT+LAV VPC+SLFKTVTVRCGHC NLLSVN+RGLLLPA     ANQLH G    +P
Sbjct:    4 SSSSSAVFPLDHLAAPSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSP 90          
BLAST of CF504168 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSI (Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.850e-25
Identity = 58/87 (66.67%), Postives = 64/87 (73.56%), Query Frame = 3
Query:  147 SSSTPAALSPDHL---SSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPA-----ANQLHLGHPFFTP 383
            SSS+ A    DHL   S +EQLCYVHC  CDT+LAV VPC+SLFKTVTVRCGHC NLLSVN+RGLLLPA     ANQLH G    +P
Sbjct:    4 SSSSSAVFPLDHLAAPSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSP 90          
BLAST of CF504168 vs. ExPASy Swiss-Prot
Match: YAB1_ARATH (Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.030e-25
Identity = 55/83 (66.27%), Postives = 62/83 (74.70%), Query Frame = 3
Query:  144 MSSSTPAALSPDHLSSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHL---GHPFFTP 383
            MSS + A  SPDH S S+ LCYV C FC T+LAV+VP TSLFKTVTVRCG CTNLLSVNMR  +LPA+NQL L    H +F P
Sbjct:    6 MSSPSSAVCSPDHFSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQLGPHSYFNP 88          
BLAST of CF504168 vs. ExPASy Swiss-Prot
Match: YAB3_ORYSJ (Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.764e-19
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 3
Query:  186 SSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLP 341
            S  EQLCYVHC +CDTVL VSVP +SLF+TVTVRCGHC++LL+VNMRGLLLP
Sbjct:   55 SEQEQLCYVHCHYCDTVLVVSVPSSSLFETVTVRCGHCSSLLTVNMRGLLLP 106          
BLAST of CF504168 vs. ExPASy Swiss-Prot
Match: YAB6_ORYSJ (Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.203e-17
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 3
Query:  183 LSSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLL--LPAANQLHLGH 368
            ++ +EQ+CYVHC FC+T+LAVSVP  S+   VTVRCGHCTNLLSVN+RGL+   PA    H  H
Sbjct:    5 IAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHHH 68          
BLAST of CF504168 vs. ExPASy Swiss-Prot
Match: YAB2_ORYSJ (Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.267e-15
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  168 LSPDHLSSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLL--LPAANQL 356
            +S   + + E +CYVHC FC+T+ AVSVP  S+   VTVRCGHCT+LLSVN+RGL+  LPA + L
Sbjct:    1 MSAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHL 65          
BLAST of CF504168 vs. ExPASy Swiss-Prot
Match: YAB2_ARATH (Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.614e-15
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 3
Query:  189 SSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNM 323
            SSE++CYVHC+FC T+LAVSVP  SLF  VTVRCGHCTNLLS+N+
Sbjct:    6 SSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNI 50          
The following BLAST results are available for this feature:
BLAST of CF504168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
YAB3_ARATH1.416e-2569.51Axial regulator YABBY 3 OS=Arabidopsis thaliana GN... [more]
YAB5_ORYSJ1.850e-2562.11Protein YABBY 5 OS=Oryza sativa subsp. japonica GN... [more]
YAB5_ORYSI1.850e-2562.11Protein YABBY 5 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB4_ORYSJ1.850e-2566.67Protein YABBY 4 OS=Oryza sativa subsp. japonica GN... [more]
YAB4_ORYSI1.850e-2566.67Protein YABBY 4 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB1_ARATH7.030e-2566.27Axial regulator YABBY 1 OS=Arabidopsis thaliana GN... [more]
YAB3_ORYSJ5.764e-1978.85Protein YABBY 3 OS=Oryza sativa subsp. japonica GN... [more]
YAB6_ORYSJ9.203e-1760.94Protein YABBY 6 OS=Oryza sativa subsp. japonica GN... [more]
YAB2_ORYSJ2.267e-1556.92Protein YABBY 2 OS=Oryza sativa subsp. japonica GN... [more]
YAB2_ARATH8.614e-1575.56Putative axial regulator YABBY 2 OS=Arabidopsis th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-656 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504168 ID=CF504168; Name=CF504168; organism=Citrus sinensis; type=EST; length=384bp
TTTATATCTATAGTACTTAACAATCAAGAAGATCAGAACAAGTTGGGATT
TTATCATCCCATCAGTCCACTGATCAGTCAGTCCATCAATCAATCAAATC
AAAACTAAAAAAATTAAAGAATCAGGATAATCAAAGAAACAGGATGTCAT
CCTCAACACCTGCTGCTTTGTCACCGGACCATCTCTCTTCCTCCGAGCAG
CTCTGTTACGTCCACTGCACCTTTTGCGACACTGTCCTCGCGGTGAGTGT
TCCTTGCACTAGTTTGTTCAAGACTGTGACGGTTCGCTGCGGCCATTGCA
CCAATCTTTTGTCTGTGAACATGCGCGGCCTGCTGCTTCCTGCAGCTAAT
CAGCTTCATCTGGGTCATCCTTTCTTCACTCCTC
back to top