CF504188

Overview
NameCF504188
Unique NameCF504188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504188 vs. ExPASy Swiss-Prot
Match: Y8359_ORYSJ (Uncharacterized protein Os08g0359500 OS=Oryza sativa subsp. japonica GN=Os08g0359500 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.032e-29
Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 2
Query:   29 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKV 337
            MSRHP VKWAQR D+VYIT+ L DA+D K+ LEPEG F FSAT+G D   YE  ++L DKV+V ESK SVG+R+I  +V+KAE KWW +L++   K P F+KV
Sbjct:    1 MSRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKVNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHFVKV 103          
BLAST of CF504188 vs. ExPASy Swiss-Prot
Match: Y8359_ORYSI (Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 6.032e-29
Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 2
Query:   29 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKV 337
            MSRHP VKWAQR D+VYIT+ L DA+D K+ LEPEG F FSAT+G D   YE  ++L DKV+V ESK SVG+R+I  +V+KAE KWW +L++   K P F+KV
Sbjct:    1 MSRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKVNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHFVKV 103          
BLAST of CF504188 vs. ExPASy Swiss-Prot
Match: Y3377_ARATH (Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.206e-22
Identity = 50/103 (48.54%), Postives = 72/103 (69.90%), Query Frame = 2
Query:   29 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKV 337
            MSR+P V WAQR+D+VY+T+ LPDA+D+ +K EP+G F FSA  G     +E  ++LY K+ + E + +VGLRNI + ++K E  WW+RLLK   KP  ++KV
Sbjct:    1 MSRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSAL-GAQGERFEFSLELYGKI-MTEYRKNVGLRNIIFSIQKEERSWWTRLLKSEEKPAPYIKV 101          
The following BLAST results are available for this feature:
BLAST of CF504188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y8359_ORYSJ6.032e-2959.22Uncharacterized protein Os08g0359500 OS=Oryza sati... [more]
Y8359_ORYSI6.032e-2959.22Uncharacterized protein OsI_027940 OS=Oryza sativa... [more]
Y3377_ARATH3.206e-2248.54Uncharacterized protein At3g03773 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-676 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504188 ID=CF504188; Name=CF504188; organism=Citrus sinensis; type=EST; length=421bp
AAAGCGCATAATTGTTTTTATCGACAAGATGAGCCGGCATCCTACTGTGA
AATGGGCCCAGAGGACTGACAGGGTCTACATAACCATTGACCTGCCTGAT
GCTCAAGATGTGAAGCTTAAATTGGAGCCTGAAGGAAAATTTTTCTTCTC
TGCTACCAGTGGACCAGATAAGATACCCTATGAAGTTGACATTGATTTGT
ACGACAAGGTTGATGTCAATGAGAGCAAAGCTAGTGTTGGCTTGAGAAAT
ATCCATTACCTTGTGAAAAAGGCAGAAAACAAATGGTGGAGCAGGCTGCT
AAAGCAGGCGGGAAAACCTCCTGTATTTCTGAAAGTTGATTGGGATAAGT
GGATTGATGAGGATGAGGAAGGGAAGGATGATAAACCTCCAGCTGATATG
GACTTCGGGGATCTTGACTTC
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