CF504190

Overview
NameCF504190
Unique NameCF504190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length400
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504190 vs. ExPASy Swiss-Prot
Match: BXDC1_ARATH (Brix domain-containing protein 1 homolog OS=Arabidopsis thaliana GN=At3g23620 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 1.676e-55
Identity = 102/133 (76.69%), Postives = 115/133 (86.47%), Query Frame = 2
Query:    2 KTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLA 400
            +TPK  + KR LE RAPKLVETGKKTLIL GTKTS TL+ V+TELY LKKG AIRY+R+NENIRPFESGGETSLEFFS KTDCSIF+YGS +KKRPDNLV+GR YDH +YDL+EVG+ENFK L +F YDKK A
Sbjct:    5 RTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRYSRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVGIENFKSLRAFSYDKKFA 137          
BLAST of CF504190 vs. ExPASy Swiss-Prot
Match: BXDC1_ORYSJ (Brix domain-containing protein 1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0513800 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 5.960e-53
Identity = 96/133 (72.18%), Postives = 116/133 (87.22%), Query Frame = 2
Query:    2 KTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLA 400
            + P++ R KR L K APKLVETGKKTLIL GTKTS  LN VL +L+ LK+ +A++Y++KN+NIRPFESGGETSLEFFSLKTDCS+ +YGS SKKRP+NLV+GRTYDHHIYDLVEVGVEN+K + S++YDKKLA
Sbjct:    6 RVPRSQRAKRELLKHAPKLVETGKKTLILHGTKTSAVLNSVLADLFHLKRDNAVKYSKKNDNIRPFESGGETSLEFFSLKTDCSLIVYGSHSKKRPNNLVLGRTYDHHIYDLVEVGVENYKSIESYVYDKKLA 138          
BLAST of CF504190 vs. ExPASy Swiss-Prot
Match: BXDC1_HUMAN (Brix domain-containing protein 1 OS=Homo sapiens GN=BXDC1 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.519e-29
Identity = 63/121 (52.07%), Postives = 86/121 (71.07%), Query Frame = 2
Query:    8 PKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPL 370
            PK  R KR LEKR PKL E  K  ++++G   + T+  VL ++Y LKK   + Y +KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+ENF  L
Sbjct:   10 PKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKKKNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIENFVSL 127          
BLAST of CF504190 vs. ExPASy Swiss-Prot
Match: BXDC1_BOVIN (Brix domain-containing protein 1 OS=Bos taurus GN=BXDC1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.519e-29
Identity = 63/121 (52.07%), Postives = 86/121 (71.07%), Query Frame = 2
Query:    8 PKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPL 370
            PK  R KR LEKR PKL E  K  ++++G   ++T+  VL ++Y LKK   I Y +KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E F  L
Sbjct:   10 PKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSTVTQVLRDVYALKKPYGILYKKKNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDIIELGIEKFVSL 127          
BLAST of CF504190 vs. ExPASy Swiss-Prot
Match: BXDC1_MOUSE (Brix domain-containing protein 1 OS=Mus musculus GN=Bxdc1 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 4.596e-29
Identity = 62/121 (51.24%), Postives = 85/121 (70.25%), Query Frame = 2
Query:    8 PKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPL 370
            PK  R KR LEKR PKL E  K  ++++G   + T+  VL ++Y LKK   + Y +KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E F  L
Sbjct:   10 PKTKRAKRFLEKREPKLTENIKNAMLIKGGNANATVTQVLRDMYALKKPYGVLYKKKNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIEKFVSL 127          
BLAST of CF504190 vs. ExPASy Swiss-Prot
Match: BXDC1_SCHPO (Brix domain-containing protein 1 homolog OS=Schizosaccharomyces pombe GN=SPAC926.08c PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.295e-23
Identity = 56/124 (45.16%), Postives = 81/124 (65.32%), Query Frame = 2
Query:    8 PKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSF 379
            PKN R KRALEKR PKLVE  K  + L+G  TS    DVL +++ LKK  ++ + +KN NI PFE    +SLEFFS K D ++ +  + +KKRP NL   R +++ + D++E+G+ N+K + SF
Sbjct:    7 PKNARTKRALEKREPKLVEGAKTAIFLRGNATSQISLDVLGDIHALKKPFSVNFQKKN-NILPFEDA--SSLEFFSEKNDAALAVMATHNKKRPHNLTWVRFFNYRVLDMIELGIVNYKSIQSF 127          
BLAST of CF504190 vs. ExPASy Swiss-Prot
Match: RPF2_YEAST (Ribosome biogenesis protein RPF2 OS=Saccharomyces cerevisiae GN=RPF2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.106e-22
Identity = 57/125 (45.60%), Postives = 80/125 (64.00%), Query Frame = 2
Query:    8 PKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGV-ENFKPLNSF 379
            PKN R KRAL KR  KLVE  K+ L + G   +  L+D++ +L  LKK    R+ RKN+ I PFE    + LEFFS K DCS+ +  ++SKKR +N+   RT+ + IYD++E+ V +NFK L+ F
Sbjct:    7 PKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRFNRKND-IHPFED--MSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVADNFKLLSDF 128          
BLAST of CF504190 vs. ExPASy Swiss-Prot
Match: BXDC1_DROME (Brix domain-containing protein 1 homolog OS=Drosophila melanogaster GN=CG7993 PE=2 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 1.935e-19
Identity = 46/130 (35.38%), Postives = 80/130 (61.54%), Query Frame = 2
Query:    2 KTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDK 391
            + PK  + K+ L  R P+L+E+ +  L L G K    +   + +L  LKK       RKN+ I PF+    +SLEF ++K D ++F +GSTSKKRPDN+++GR +++ + D+ E+G++ ++ ++ F  +K
Sbjct:    7 RKPKTRKGKKVLLAREPQLIESARTMLFLDGRKCGGNVKLCMKDLQALKKPLVKVLNRKND-ITPFDD--PSSLEFLTMKNDAALFTFGSTSKKRPDNIILGRIFENEVLDMFELGIKRYQAISEFKNEK 133          
BLAST of CF504190 vs. ExPASy Swiss-Prot
Match: BXDC1_DICDI (Brix domain-containing protein 1 homolog OS=Dictyostelium discoideum GN=bxdc1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.935e-19
Identity = 46/123 (37.40%), Postives = 79/123 (64.23%), Query Frame = 2
Query:   11 KNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSF 379
            K+   K+ L  +  K VE  K+ + ++G ++S+ +  +  +L++LKK  AI+Y +KN   RP ES    S+EF   K++ S+F +GS SKKR  NL++GR +D+ ++D++E+G+ NFK +  F
Sbjct:   16 KSHAAKKFLRNKEAKEVEIVKQAMFIRGQQSSDIIQKLQKDLFMLKKPEAIQYNKKNA-FRPMESA--ESIEFLGEKSNSSLFTFGSHSKKREHNLIMGRLFDNAVFDMIEMGISNFKSIKEF 135          
BLAST of CF504190 vs. ExPASy Swiss-Prot
Match: BXDC1_CAEEL (Brix domain-containing protein 1 homolog OS=Caenorhabditis elegans GN=Y54E10A.10 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.215e-13
Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 2
Query:   11 KNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSF 379
            K  + KR L  RA K VE  KK L  +G KT+  ++  + +L+ +KK    +  + N     FE   ET +     K D S+F+ GS SKK+P+ L  GRTYD  + D+ E+ + ++K  ++F
Sbjct:    8 KTKKGKRVLVNRASKTVENDKKALFCRGAKTNEIISHAMMDLFDMKKPLTTKMDKHNP-YHLFED--ETPIVRAGSKFDTSLFVLGSNSKKKPNCLTFGRTYDGQLLDMAELRITSYKSSSNF 127          
The following BLAST results are available for this feature:
BLAST of CF504190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
BXDC1_ARATH1.676e-5576.69Brix domain-containing protein 1 homolog OS=Arabid... [more]
BXDC1_ORYSJ5.960e-5372.18Brix domain-containing protein 1 homolog OS=Oryza ... [more]
BXDC1_HUMAN3.519e-2952.07Brix domain-containing protein 1 OS=Homo sapiens G... [more]
BXDC1_BOVIN3.519e-2952.07Brix domain-containing protein 1 OS=Bos taurus GN=... [more]
BXDC1_MOUSE4.596e-2951.24Brix domain-containing protein 1 OS=Mus musculus G... [more]
BXDC1_SCHPO1.295e-2345.16Brix domain-containing protein 1 homolog OS=Schizo... [more]
RPF2_YEAST7.106e-2245.60Ribosome biogenesis protein RPF2 OS=Saccharomyces ... [more]
BXDC1_DROME1.935e-1935.38Brix domain-containing protein 1 homolog OS=Drosop... [more]
BXDC1_DICDI1.935e-1937.40Brix domain-containing protein 1 homolog OS=Dictyo... [more]
BXDC1_CAEEL1.215e-1334.96Brix domain-containing protein 1 homolog OS=Caenor... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-678 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504190 ID=CF504190; Name=CF504190; organism=Citrus sinensis; type=EST; length=400bp
GAAAACTCCCAAGAATCCCAGAGTCAAGCGTGCGCTTGAAAAACGTGCTC
CAAAACTTGTTGAGACAGGGAAGAAGACGCTTATTCTTCAAGGAACAAAG
ACGAGCAACACGTTGAATGATGTATTAACAGAACTTTATCTTCTGAAGAA
AGGAAGTGCAATAAGATATACCCGAAAGAATGAAAACATTAGACCTTTTG
AAAGTGGTGGTGAAACTTCTTTGGAGTTCTTTTCACTAAAAACGGATTGC
AGCATTTTTATTTATGGTTCAACCTCAAAGAAGCGGCCTGACAACCTGGT
TATAGGGCGAACATATGATCACCATATCTATGATCTCGTAGAGGTTGGGG
TTGAAAACTTTAAGCCCCTGAATTCATTCATATACGATAAGAAACTAGCT
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