CF504202

Overview
NameCF504202
Unique NameCF504202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length162
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:18..179. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKG 161
            MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKG
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKG 42
[Close]
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.586e-19
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKG 161
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKG
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKG 42
[Close]
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.586e-19
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKG 161
            MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KG
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKG 42
[Close]
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.586e-19
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKG 161
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKG
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKG 42
[Close]
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL102_ORYSI (60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.586e-19
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKG 161
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKG
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKG 42
[Close]
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.586e-19
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKG 161
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKG
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKG 42
[Close]
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.586e-19
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKG 161
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKG
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKG 42
[Close]
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.860e-18
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKG 161
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KG
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKG 42
[Close]
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.860e-18
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKG 161
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KG
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKG 42
[Close]
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.860e-18
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKG 161
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KG
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKG 42
The following BLAST results are available for this feature:
BLAST of CF504202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RL10_EUPES1.161e-19100.0060S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL10_VITRI2.586e-1997.6260S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_SOLME2.586e-1997.6260S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL102_ORYSJ2.586e-1997.6260S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ORYSI2.586e-1997.6260S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL101_ORYSJ2.586e-1997.6260S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ORYSI2.586e-1997.6260S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL103_ARATH2.860e-1892.8660S ribosomal protein L10-3 OS=Arabidopsis thalian... [more]
RL102_ARATH2.860e-1892.8660S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL101_ARATH2.860e-1892.8660S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-690 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504202 ID=CF504202; Name=CF504202; organism=Citrus sinensis; type=EST; length=162bp
GAGAGAATAGCTGAGACCGAACACGAACGCTCGCCATGGGAAGAAGACCG
GCAAGGTGTTACCGCCAAATCAAGAACAAACCCTACCCAAAGTCCCGCTT
TTGCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACGATGTCGGGATGA
AGAAGAAAGGCA
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