CF504206

Overview
NameCF504206
Unique NameCF504206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length454
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4834 contig Csv1_Contig4834:80..533. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504206 vs. ExPASy Swiss-Prot
Match: RR10_MESCR (30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS10 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.136e-30
Identity = 66/96 (68.75%), Postives = 73/96 (76.04%), Query Frame = 2
Query:  179 STTNTRVFSAPETL----AGXXXXXXXXXXPETLSVSSGADQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLK 454
            S++N RVF+APE L     G             L + + +DQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRI+CVLK
Sbjct:   53 SSSNVRVFAAPEVLESQETGPESYVEEGSETSALGIGADSDQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLK 148          
BLAST of CF504206 vs. ExPASy Swiss-Prot
Match: RR10_ARATH (30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.192e-29
Identity = 72/138 (52.17%), Postives = 88/138 (63.77%), Query Frame = 2
Query:   53 SLSAAISPSLTVPIXXXXXXXXXXXXXPSKNYAG--NTLKLEPLSTTNTRVFSAPETL--AGXXXXXXXXXXPETLSVSSGADQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLK 454
            ++S+ + PS  +P              PS +  G  ++  L   S + T+VF+ P+TL              P + S+S  AD+MAPKQKIRIKLRSYWVPLIEDSCKQI+DAAR TNAKTMGPVPLPTKKRIYCVLK
Sbjct:    5 TVSSFLLPSFGIPSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKPSVSLTKVFAVPDTLDPTPEILDEPASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLK 142          
BLAST of CF504206 vs. ExPASy Swiss-Prot
Match: RR10_CYAPA (Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa GN=rps10 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.030e-12
Identity = 31/49 (63.27%), Postives = 43/49 (87.76%), Query Frame = 2
Query:  308 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLK 454
            KIRI+LRSY   L+E+SC+QI++AA+ T+A  +GP+PLPTKK+IYCVL+
Sbjct:    8 KIRIQLRSYDSSLLENSCEQIIEAAKRTDATAVGPIPLPTKKKIYCVLR 56          
BLAST of CF504206 vs. ExPASy Swiss-Prot
Match: RR10_PORPU (30S ribosomal protein S10, chloroplastic OS=Porphyra purpurea GN=rps10 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.258e-11
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 2
Query:  308 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLK 454
            KIRIKL++Y   L+  SCK+I+D A  TNA  +GP+PLPTK+RIYCVL+
Sbjct:    8 KIRIKLKAYNSSLLNTSCKKIVDTAERTNAIAVGPIPLPTKRRIYCVLR 56          
BLAST of CF504206 vs. ExPASy Swiss-Prot
Match: RR10_GUITH (30S ribosomal protein S10, chloroplastic OS=Guillardia theta GN=rps10 PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 9.486e-11
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 2
Query:  302 KQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLK 454
            KQKIRI+L+ Y   L+ DSC +I++ A  TN+ T GP+PLPT+++IYCVL+
Sbjct:    3 KQKIRIRLKGYETNLLLDSCNKIIETATRTNSVTAGPIPLPTRRKIYCVLR 53          
BLAST of CF504206 vs. ExPASy Swiss-Prot
Match: RR10_EMIHU (30S ribosomal protein S10, chloroplastic OS=Emiliania huxleyi GN=rps10 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.486e-11
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:  305 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLK 454
            QK+RI L++Y   L+ DSC QI++A  T   K +GP+PLPTK+RIYCVL+
Sbjct:    4 QKLRIALKAYETSLLNDSCTQIINAVETGGVKAIGPIPLPTKRRIYCVLR 53          
The following BLAST results are available for this feature:
BLAST of CF504206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RR10_MESCR3.136e-3068.7530S ribosomal protein S10, chloroplastic OS=Mesemb... [more]
RR10_ARATH1.192e-2952.1730S ribosomal protein S10, chloroplastic OS=Arabid... [more]
RR10_CYAPA5.030e-1263.27Cyanelle 30S ribosomal protein S10 OS=Cyanophora p... [more]
RR10_PORPU4.258e-1161.2230S ribosomal protein S10, chloroplastic OS=Porphy... [more]
RR10_GUITH9.486e-1154.9030S ribosomal protein S10, chloroplastic OS=Guilla... [more]
RR10_EMIHU9.486e-1156.0030S ribosomal protein S10, chloroplastic OS=Emilia... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-694 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504206 ID=CF504206; Name=CF504206; organism=Citrus sinensis; type=EST; length=454bp
CACAACGAAAGGGAAGGAAAAAAAATCTAACGTAAAAAAATGGCAACCTT
TTTCATTATCTGCAGCAATTTCCCCTTCCTTAACCGTACCCATCTCCTCA
AATTCAAAATGCTCTGTTTTTTCCGTATCTTTTCCCTCGAAAAATTATGC
CGGTAATACGCTAAAACTCGAACCTCTTTCAACGACAAATACTAGGGTTT
TTTCCGCTCCTGAAACCCTAGCTGGGTCAGAAAGTTCTGCTGTTGAGGCT
GAAGTTCCCGAGACTCTCAGTGTCAGCTCAGGTGCAGACCAGATGGCACC
AAAGCAGAAAATCAGAATCAAGCTTAGGTCTTACTGGGTGCCCTTGATCG
AGGACTCTTGCAAGCAGATAATGGATGCTGCAAGAACTACCAATGCAAAG
ACCATGGGCCCTGTGCCATTACCGACCAAGAAGCGGATCTACTGTGTTCT
CAAA
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