CF504207

Overview
NameCF504207
Unique NameCF504207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2225 contig Csv1_Contig2225:231..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.937e-74
Identity = 112/116 (96.55%), Postives = 116/116 (100.00%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 420
            WQATIMGPSDSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+D+AKYESTARSWTQKYAMG
Sbjct:   33 WQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          

HSP 2 Score: 55.8398 bits (133), Expect = 1.937e-74
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            LKDLQKDPPTSCSAGPVAEDMFH  +   GP
Sbjct:   10 LKDLQKDPPTSCSAGPVAEDMFHWQATIMGP 40          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 4.297e-74
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 420
            WQATIMGPS+SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+DK KYESTARSWTQKYAMG
Sbjct:   33 WQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148          

HSP 2 Score: 55.8398 bits (133), Expect = 4.297e-74
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            LKDLQKDPPTSCSAGPVAEDMFH  +   GP
Sbjct:   10 LKDLQKDPPTSCSAGPVAEDMFHWQATIMGP 40          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 7.309e-74
Identity = 112/116 (96.55%), Postives = 115/116 (99.14%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 420
            WQATIMGPSDSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+DK KYESTAR+WTQKYAMG
Sbjct:   33 WQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148          

HSP 2 Score: 55.8398 bits (133), Expect = 7.309e-74
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            LKDLQKDPPTSCSAGPVAEDMFH  +   GP
Sbjct:   10 LKDLQKDPPTSCSAGPVAEDMFHWQATIMGP 40          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 9.533e-74
Identity = 111/116 (95.69%), Postives = 116/116 (100.00%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 420
            WQATIMGP+DSPYAGGVFLV+IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+D+AKYE+TARSWTQKYAMG
Sbjct:   33 WQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148          

HSP 2 Score: 55.8398 bits (133), Expect = 9.533e-74
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            LKDLQKDPPTSCSAGPVAEDMFH  +   GP
Sbjct:   10 LKDLQKDPPTSCSAGPVAEDMFHWQATIMGP 40          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 4.692e-73
Identity = 109/116 (93.97%), Postives = 116/116 (100.00%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 420
            WQATIMGP++SPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+D+AKYE+TAR+WTQKYAMG
Sbjct:   33 WQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148          

HSP 2 Score: 55.8398 bits (133), Expect = 4.692e-73
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            LKDLQKDPPTSCSAGPVAEDMFH  +   GP
Sbjct:   10 LKDLQKDPPTSCSAGPVAEDMFHWQATIMGP 40          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 3.286e-71
Identity = 107/116 (92.24%), Postives = 115/116 (99.14%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 420
            WQATIMGP +SPYAGGVFLV+IHFPPDYPFKPPKV+F+TKV+HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+D++KYESTARSWTQKYAMG
Sbjct:   33 WQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148          

HSP 2 Score: 53.1434 bits (126), Expect = 3.286e-71
Identity = 23/31 (74.19%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            LKDLQKDPP++CSAGPVAEDMFH  +   GP
Sbjct:   10 LKDLQKDPPSNCSAGPVAEDMFHWQATIMGP 40          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 8.679e-69
Identity = 107/116 (92.24%), Postives = 115/116 (99.14%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 420
            WQATIMGP+DSP+AGGVFLVTIHFPPDYPFKPPKVAFRTKV+HPNINSNGSICLDILKEQWSPALT+SKVLLSICSLLTDPNPDDPLVPEIAH+YK+D+ KYESTA+SWTQKYAMG
Sbjct:   33 WQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148          

HSP 2 Score: 44.2838 bits (103), Expect = 8.679e-69
Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 3
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L+DLQ+DPP SCSAGP  +DMF   +   GP
Sbjct:   10 LRDLQRDPPVSCSAGPTGDDMFQWQATIMGP 40          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 4.656e-67
Identity = 102/115 (88.70%), Postives = 111/115 (96.52%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGP++SPY+GGVFLV IHFPPDYPFKPPKV FRTKVFHPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH+YK+DK KYE+ ARSWTQKYA+
Sbjct:   33 WQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147          

HSP 2 Score: 48.1358 bits (113), Expect = 4.656e-67
Identity = 20/31 (64.52%), Postives = 23/31 (74.19%), Query Frame = 3
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            LK+LQ+DPP SCSAGP  EDMFH  +   GP
Sbjct:   10 LKELQRDPPVSCSAGPTGEDMFHWQATIMGP 40          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 1.901e-62
Identity = 95/115 (82.61%), Postives = 108/115 (93.91%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGPSDSPYAGGVF + IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICS+LTDPNPDDPLVPEIAH+YK+ +A+YESTAR WT+KYA+
Sbjct:   33 WQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRKYAI 147          

HSP 2 Score: 45.4394 bits (106), Expect = 1.901e-62
Identity = 19/31 (61.29%), Postives = 23/31 (74.19%), Query Frame = 3
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DL +DPP+SCSAGPV ED+FH  +   GP
Sbjct:   10 LTDLGRDPPSSCSAGPVGEDLFHWQATIMGP 40          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 5.496e-62
Identity = 93/115 (80.87%), Postives = 109/115 (94.78%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGP+DSPYAGGVF ++IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH+YK+D+++YE +AR WT+KYA+
Sbjct:   33 WQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAI 147          

HSP 2 Score: 45.4394 bits (106), Expect = 5.496e-62
Identity = 19/31 (61.29%), Postives = 23/31 (74.19%), Query Frame = 3
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DL KDPP+SCSAGPV +D+FH  +   GP
Sbjct:   10 LADLGKDPPSSCSAGPVGDDLFHWQATIMGP 40          
The following BLAST results are available for this feature:
BLAST of CF504207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UBC28_ARATH1.937e-7496.55Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC10_ARATH4.297e-7497.41Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC9_ARATH7.309e-7496.55SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC4_SOLLC9.533e-7495.69Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC8_ARATH4.692e-7393.97Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC11_ARATH3.286e-7192.24Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC30_ARATH8.679e-6992.24Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH4.656e-6788.70Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC1_MAGGR1.901e-6282.61Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC4_SCHPO5.496e-6280.87Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-695 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504207 ID=CF504207; Name=CF504207; organism=Citrus sinensis; type=EST; length=472bp
AACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCT
GTGGCTGAAGACATGTTCCACCTGGCAAGCAACAATTATGGGCCCTTCTG
ATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCT
GATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCA
CCCGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAAC
AGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCC
TTGCTTACTGATCCAAATCCCGACGACCCTCTTGTACCGGAGATTGCCCA
CATGTACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAGGAGCTGGA
CACAGAAGTATGCCATGGGATGAAGGGTGTTAGGATATTGCAGAAAAAGG
AGCATTTATTGAAATATGGTGG
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