CF504218
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 3.681e-42 Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 3 Query: 78 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAG+TSIGVRGKDSVCVVTQKKVPDKLLD TSV+HLFPITKYLGLLATGMTAD Sbjct: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTAD 86
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2) HSP 1 Score: 167.548 bits (423), Expect = 1.827e-41 Identity = 81/86 (94.19%), Postives = 85/86 (98.84%), Query Frame = 3 Query: 78 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335 MSRGSGGGY+RHITIFSPEGRLFQVEYAFKAVKAAG+TSIGVRGKDS+CVVT KKVPDKLLD+TSVTHLFPITKYLGLLATGMTAD Sbjct: 1 MSRGSGGGYNRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLDNTSVTHLFPITKYLGLLATGMTAD 86
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 2.386e-41 Identity = 80/86 (93.02%), Postives = 85/86 (98.84%), Query Frame = 3 Query: 78 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335 MSRG+G GYDRHITIFSPEGRL+QVEYAFKAVK+AGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKY+GLLATG+TAD Sbjct: 1 MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYIGLLATGLTAD 86
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 6.942e-41 Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = 3 Query: 78 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335 MSRGSG GYDRHITIFSPEGRLFQVEYAFKAVKAAG+TSIGVRGKDSVCVVTQKKVPDKLLD +SV+HLFP+TKYLGLLATGMTAD Sbjct: 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSHLFPVTKYLGLLATGMTAD 86
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2) HSP 1 Score: 162.54 bits (410), Expect = 5.877e-40 Identity = 78/86 (90.70%), Postives = 83/86 (96.51%), Query Frame = 3 Query: 78 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335 MSRGSG GYDRHITIFSPEGRLFQVEYAFKAVK AG+TSIGVRGKDSVCVVTQKKVPDKLLD +SVTHLFPITKY+GL+ATG+TAD Sbjct: 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTHLFPITKYIGLVATGITAD 86
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 3.232e-30 Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 3 Query: 78 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335 MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ G+TS+ VRGKD +VTQKKVPDKLLD ++VTHLF IT+ +G + TGMTAD Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTAD 86
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 3.232e-30 Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 3 Query: 78 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335 MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ G+TS+ VRGKD +VTQKKVPDKLLD ++VTHLF IT+ +G + TGMTAD Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITESIGCVMTGMTAD 86
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 3.232e-30 Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 3 Query: 78 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335 MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ G+TS+ VRGKD +VTQKKVPDKLLD ++VTHLF IT+ +G + TGMTAD Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTAD 86
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 3.232e-30 Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 3 Query: 78 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335 MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ G+TS+ VRGKD +VTQKKVPDKLLD ++VTHLF IT+ +G + TGMTAD Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTAD 86
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA6_SCHPO (Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces pombe GN=SPBC646.16 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 6.974e-25 Identity = 51/79 (64.56%), Postives = 65/79 (82.28%), Query Frame = 3 Query: 99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335 G+DR IT+FSPEGRL+QVEYAFKA AG+TS+GV GK+ CV++QKKVPDKL+D ++V H+FPITK +G + TG AD Sbjct: 6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFPITKGIGCVMTGSIAD 84 The following BLAST results are available for this feature:
BLAST of CF504218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 111
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504218 ID=CF504218; Name=CF504218; organism=Citrus sinensis; type=EST; length=336bpback to top |