CF504220

Overview
NameCF504220
Unique NameCF504220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504220_ssr7 microsatellite CF504220_ssr7:7..16. BLAST: Citrus ESTs to Prunus persica proteins V1
CF504220_ssr22 microsatellite CF504220_ssr22:22..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5486 contig Csv1_Contig5486:23..251. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.686e-26
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 3
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 227
            MVSLKLQKRL+ASV+KCG+GKVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA
Sbjct:    1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 63          
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.757e-26
Identity = 56/63 (88.89%), Postives = 61/63 (96.83%), Query Frame = 3
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 227
            MVSLK+QKRL+ASV+KCG+GKVWLDPNE  +ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA
Sbjct:    1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 63          
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 2.435e-25
Identity = 56/63 (88.89%), Postives = 61/63 (96.83%), Query Frame = 3
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 227
            MVSLKLQKRL++SVLKCG+ KVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA
Sbjct:    1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 63          
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL19_MAIZE (60S ribosomal protein L19 (Fragment) OS=Zea mays GN=RPL19 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.592e-24
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 3
Query:   48 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 224
            LKLQKRL+AS LKCG+GKVWLDPNEV+EISMANSRQNIRKLVKDGFII+KP KIHSRSR
Sbjct:    1 LKLQKRLAASYLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIKKPHKIHSRSR 59          
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL19_DICDI (60S ribosomal protein L19 OS=Dictyostelium discoideum GN=rpl19 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.786e-21
Identity = 43/63 (68.25%), Postives = 57/63 (90.48%), Query Frame = 3
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 227
            MVSLKLQKRL+AS+LKCG+G+VW+DPNE+ +++MANSR N+R+L+  GFI+RKP  +HSRSRA
Sbjct:    1 MVSLKLQKRLAASILKCGKGRVWIDPNEIADVAMANSRDNVRRLIATGFIMRKPVVVHSRSRA 63          
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL19_DROME (60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.106e-21
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 3
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 224
            M SLKLQKRL+ASVL+CG+ KVWLDPNE+NEI+  NSRQNIRKL+KDG II+KP  +HSR R
Sbjct:    1 MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYR 62          
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL19B_SCHPO (60S ribosomal protein L19-B OS=Schizosaccharomyces pombe GN=rpl19b PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.080e-20
Identity = 45/62 (72.58%), Postives = 54/62 (87.10%), Query Frame = 3
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 224
            M +L+ QKRL+ASVLKCG+ KVW+DPNE++EIS ANSRQNIRKLVKDG +IRKP  +HSR R
Sbjct:    1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFR 62          
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL19A_SCHPO (60S ribosomal protein L19-A OS=Schizosaccharomyces pombe GN=rpl19a PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 5.254e-20
Identity = 43/62 (69.35%), Postives = 54/62 (87.10%), Query Frame = 3
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 224
            M +L+ QKRL+ASVLKCG+ KVW+DPNE++EIS ANSRQN+RKL+KDG +IRKP  +HSR R
Sbjct:    1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFR 62          
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis GN=rpl19 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.862e-20
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 3
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 224
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG IIRKP  +HSR+R
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIRKPVTVHSRAR 62          
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL19_RAT (60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.962e-20
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 3
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 224
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRAR 62          
The following BLAST results are available for this feature:
BLAST of CF504220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL191_ARATH1.686e-2690.4860S ribosomal protein L19-1 OS=Arabidopsis thalian... [more]
RL192_ARATH3.757e-2688.8960S ribosomal protein L19-2 OS=Arabidopsis thalian... [more]
RL193_ARATH2.435e-2588.8960S ribosomal protein L19-3 OS=Arabidopsis thalian... [more]
RL19_MAIZE4.592e-2489.8360S ribosomal protein L19 (Fragment) OS=Zea mays G... [more]
RL19_DICDI2.786e-2168.2560S ribosomal protein L19 OS=Dictyostelium discoid... [more]
RL19_DROME8.106e-2174.1960S ribosomal protein L19 OS=Drosophila melanogast... [more]
RL19B_SCHPO3.080e-2072.5860S ribosomal protein L19-B OS=Schizosaccharomyces... [more]
RL19A_SCHPO5.254e-2069.3560S ribosomal protein L19-A OS=Schizosaccharomyces... [more]
RL19_XENLA6.862e-2072.5860S ribosomal protein L19 OS=Xenopus laevis GN=rpl... [more]
RL19_RAT8.962e-2070.9760S ribosomal protein L19 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-709 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504220 ID=CF504220; Name=CF504220; organism=Citrus sinensis; type=EST; length=229bp
GATCGCGAGAGAGAGAGGGGGAGAGAAGAGAAGAGAAAATGGTGTCGTTG
AAGTTACAGAAGCGGCTCTCCGCTAGCGTCCTCAAGTGCGGACGTGGCAA
GGTCTGGCTTGACCCTAATGAGGTCAACGAAATCTCCATGGCCAACTCCA
GGCAGAACATTAGGAAATTGGTGAAGGATGGTTTCATCATCAGGAAGCCA
ACAAAGATCCACTCCCGTTCTCGTGCTCG
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