CF504221

Overview
NameCF504221
Unique NameCF504221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12926 contig Csv1_Contig12926:110..506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504221 vs. ExPASy Swiss-Prot
Match: CSN1_ARATH (COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana GN=CSN1 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.631e-30
Identity = 63/87 (72.41%), Postives = 73/87 (83.91%), Query Frame = 1
Query:  139 PIISGEQLDVEAYASLYQGRTKITRLMFIADHCD-IVSMQLEALRMAYDEIKKGENTQLFREVVKKIDGRLGPNYAMDEAWCDSVDR 396
            PIISGE LD+EAYA+LY+GRTKI RL+FIA+HC    ++Q +ALRMAYDEIKKGENTQLFREVV KI  RLG  Y MD AWC++VDR
Sbjct:   27 PIISGEPLDIEAYAALYKGRTKIMRLLFIANHCGGNHALQFDALRMAYDEIKKGENTQLFREVVNKIGNRLGEKYGMDLAWCEAVDR 113          

HSP 2 Score: 24.6386 bits (52), Expect = 1.631e-30
Identity = 12/24 (50.00%), Postives = 18/24 (75.00%), Query Frame = 3
Query:   57 MEPEDEQSNSMMEEIYSNGGEESA 128
            ME ++E S  MME + +NGGEE++
Sbjct:    1 MERDEEASGPMME-MCTNGGEETS 23          
The following BLAST results are available for this feature:
BLAST of CF504221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CSN1_ARATH1.631e-3072.41COP9 signalosome complex subunit 1 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-710 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504221 ID=CF504221; Name=CF504221; organism=Citrus sinensis; type=EST; length=396bp
AGAAGTAACAAGCAATTCCTTAACCAAACGAAACCGTAACCCTAAGTCCT
AACGCAATGGAACCCGAAGACGAGCAATCGAATTCAATGATGGAGGAGAT
CTACTCGAACGGCGGCGAAGAATCGGCGCCGTACCAGACCAATCATAAGC
GGGGAGCAGCTGGACGTCGAGGCTTACGCGAGCCTGTACCAAGGGAGGAC
GAAGATCACGCGGCTAATGTTTATCGCCGATCACTGCGACATCGTTTCGA
TGCAGCTTGAGGCGCTTCGAATGGCCTACGATGAGATTAAGAAAGGCGAG
AACACGCAACTTTTCAGAGAGGTTGTGAAGAAGATTGATGGGAGGCTGGG
CCCCAATTATGCCATGGACGAGGCTTGGTGCGATTCCGTGGATCGC
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