CF504232

Overview
NameCF504232
Unique NameCF504232
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length241
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9546 contig Csv1_Contig9546:218..458. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504232 vs. ExPASy Swiss-Prot
Match: CSN3_ARATH (COP9 signalosome complex subunit 3 OS=Arabidopsis thaliana GN=CSN3 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.663e-18
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 2
Query:    2 KHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKI 241
            KHSLGYLYFLE      ++KE+A   +PIIARFI SC A QIR    KF+++CK  KD V+ L  P+RGVGP+L A++K+
Sbjct:   57 KHSLGYLYFLEVLTCGPVSKEKAAYEIPIIARFINSCDAGQIRLASYKFVSLCKILKDHVIALGDPLRGVGPLLNAVQKL 136          
The following BLAST results are available for this feature:
BLAST of CF504232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CSN3_ARATH1.663e-1855.00COP9 signalosome complex subunit 3 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-721 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504232 ID=CF504232; Name=CF504232; organism=Citrus sinensis; type=EST; length=241bp
CAAGCACTCCCTCGGTTACCTTTATTTCTTAGAGCCATGTATGTACTGTT
CGATAACGAAAGAGCGAGCAAACACACTGGTTCCAATCATTGCTCGATTC
ATTACTTCTTGTTCTGCGGAGCAGATTCGTTACGTGCCAGAGAAGTTCAT
CAATGTTTGTAAGAGGTATAAGGATCAAGTGTTGCTGCTTGAAGCACCCA
TCAGAGGGGTGGGTCCAATGCTGACCGCTATCCGCAAGATT
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