CF504238

Overview
NameCF504238
Unique NameCF504238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504238_ssr103 microsatellite CF504238_ssr103:103..114. BLAST: Citrus ESTs to Prunus persica proteins V1
CF504238_ssr116 microsatellite CF504238_ssr116:116..127. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: GDL82_ARATH (GDSL esterase/lipase At5g45670 OS=Arabidopsis thaliana GN=At5g45670 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.541e-44
Identity = 82/115 (71.30%), Postives = 99/115 (86.09%), Query Frame = 2
Query:  257 GDRISFSGQVKNYQNTVQQVVNLLGNQDQAANYLSRCIYSIGLGSNDYLNNYFQPLYYSTGRQYTPEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSPNQLAQNSPDGR 601
            G RI+F+GQV N+ NTV QVVN+LG+Q++A+NYLS+CIYSIGLGSNDYLNNYF P +YSTG Q++PE YAD L+ +YT+QL+ LY  GARKF LIGVG IGCSPN+LAQNS DGR
Sbjct:  122 GGRIAFAGQVANHVNTVSQVVNILGDQNEASNYLSKCIYSIGLGSNDYLNNYFMPTFYSTGNQFSPESYADDLVARYTEQLRVLYTNGARKFALIGVGAIGCSPNELAQNSRDGR 236          
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: GDL14_ARATH (GDSL esterase/lipase At1g29660 OS=Arabidopsis thaliana GN=At1g29660 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.319e-44
Identity = 82/114 (71.93%), Postives = 95/114 (83.33%), Query Frame = 2
Query:  257 GDRISFSGQVKNYQNTVQQVVNLLGNQDQAANYLSRCIYSIGLGSNDYLNNYFQPLYYSTGRQYTPEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSPNQLAQNSPDG 598
            G RI+FSGQV+NY+NTV QVV +LG++  AA+YL RCIYS+G+GSNDYLNNYF P +YST RQYTPEQYAD LI +Y  QL ALYNYGARKF L+G+G IGCSPN LAQ S DG
Sbjct:  124 GQRITFSGQVENYKNTVAQVVEILGDEYTAADYLKRCIYSVGMGSNDYLNNYFMPQFYSTSRQYTPEQYADDLISRYRDQLNALYNYGARKFALVGIGAIGCSPNALAQGSQDG 237          
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: GDL65_ARATH (GDSL esterase/lipase At4g18970 OS=Arabidopsis thaliana GN=At4g18970 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.661e-44
Identity = 80/114 (70.18%), Postives = 100/114 (87.72%), Query Frame = 2
Query:  257 GDRISFSGQVKNYQNTVQQVVNLLGNQDQAANYLSRCIYSIGLGSNDYLNNYFQPLYYSTGRQYTPEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSPNQLAQNSPDG 598
            G RI+F+GQV N+ NTV QVVN+LG++++AANYLS+CIYSIGLGSNDYLNNYF P+YYSTG QY+P+ YA+ LI +YT+QL+ +YN GARKF L+G+G IGCSPN+LAQNS DG
Sbjct:  121 GARITFAGQVANHVNTVSQVVNILGDENEAANYLSKCIYSIGLGSNDYLNNYFMPVYYSTGSQYSPDAYANDLINRYTEQLRIMYNNGARKFALVGIGAIGCSPNELAQNSRDG 234          
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: GDL15_ARATH (GDSL esterase/lipase At1g29670 OS=Arabidopsis thaliana GN=At1g29670 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.792e-43
Identity = 82/115 (71.30%), Postives = 96/115 (83.48%), Query Frame = 2
Query:  257 GDRISFSGQVKNYQNTVQQVVNLLGNQDQAANYLSRCIYSIGLGSNDYLNNYFQPLYYSTGRQYTPEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSPNQLAQNSPDGR 601
            G RISFSGQV+NYQ TV QVV LLG++ +AA+YL RCIYS+GLGSNDYLNNYF P +YS+ RQ+TPEQYA+ LI +Y+ QL ALYNYGARKF L G+G +GCSPN LA  SPDGR
Sbjct:  124 GQRISFSGQVRNYQTTVSQVVQLLGDETRAADYLKRCIYSVGLGSNDYLNNYFMPTFYSSSRQFTPEQYANDLISRYSTQLNALYNYGARKFALSGIGAVGCSPNALA-GSPDGR 237          
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: GDL17_ARATH (GDSL esterase/lipase At1g33811 OS=Arabidopsis thaliana GN=At1g33811 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.023e-25
Identity = 59/120 (49.17%), Postives = 78/120 (65.00%), Query Frame = 2
Query:  257 GDRISFSGQVKNYQNTVQQVVNLL-GNQDQAANYLSRCIYSIGLGSNDYLNNYFQPLYYSTGRQYTPEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSPNQLA----QNSPDGR 601
            G   S + QV+ Y   VQQ++    G+ ++   YLSRCI+  G+GSNDYLNNYF P +YST   Y  + +A+ LI+ YTQQL  LY +GARK ++ GVGQIGC P QLA    +N+  GR
Sbjct:  127 GAHTSMNQQVELYTTAVQQMLRYFRGDTNELQRYLSRCIFYSGMGSNDYLNNYFMPDFYSTSTNYNDKTFAESLIKNYTQQLTRLYQFGARKVIVTGVGQIGCIPYQLARYNNRNNSTGR 246          
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: GDL29_ARATH (GDSL esterase/lipase At1g71691 OS=Arabidopsis thaliana GN=At1g71691 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.229e-23
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 2
Query:  263 RISFSGQVKNYQNTVQQVVNLLGNQDQAANYLSRCIYSIGLGSNDYLNNYFQPLYYSTGRQYTPEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSPNQLAQNSPDGR 601
            RI F  Q+ N++ T+ QV +  G     A+ ++R ++ IG+GSNDYLNNY  P  + T  QY  +Q+ DLL+Q YT QL  LYN G RKFV+ G+G++GC P+ LAQ + DG+
Sbjct:  149 RIPFDQQIHNFETTLDQVASKSGGAVAIADSVTRSLFFIGMGSNDYLNNYLMP-NFPTRNQYNSQQFGDLLVQHYTDQLTRLYNLGGRKFVVAGLGRMGCIPSILAQGN-DGK 259          
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: GLIP7_ARATH (GDSL esterase/lipase 7 OS=Arabidopsis thaliana GN=GLIP7 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.794e-21
Identity = 48/109 (44.04%), Postives = 69/109 (63.30%), Query Frame = 2
Query:  257 GDRISFSGQVKNYQNTVQ-QVVNLLGNQDQAANYLSRCIYSIGLGSNDYLNNYFQPLYYSTGRQYTPEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSPNQLA 580
            G R +F+GQ+  ++ T++ ++     N      YL++ I  I +GSNDY+NNY  P  YST + Y+ E YADLLI+  + Q+  LYN GARK VL G G +GC P+QL+
Sbjct:  123 GARTTFNGQISQFEITIELRLRRFFQNPADLRKYLAKSIIGINIGSNDYINNYLMPERYSTSQTYSGEDYADLLIKTLSAQISRLYNLGARKMVLAGSGPLGCIPSQLS 231          
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: GDL37_ARATH (GDSL esterase/lipase At2g19060 OS=Arabidopsis thaliana GN=At2g19060 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.658e-19
Identity = 44/110 (40.00%), Postives = 66/110 (60.00%), Query Frame = 2
Query:  257 GDRISFSGQVKNYQNTVQQVVNLLGNQDQAANYLSRCIYSIGLGSNDYLNNYFQPLYYSTGRQYTPEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSPNQLAQN 586
            G+RISF  Q+ N++  +                L +C+Y+I +GSNDYLNNYF P  Y+T   ++ ++YAD LIQ Y   L++LY  GARK  + GV ++GC+P  +A +
Sbjct:  123 GERISFEKQITNHRKMIMTA-------GVPPEKLKKCLYTINIGSNDYLNNYFMPAPYTTNENFSFDEYADFLIQSYRSYLKSLYVLGARKVAVFGVSKLGCTPRMIASH 225          
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: GDL36_ARATH (GDSL esterase/lipase At2g19050 OS=Arabidopsis thaliana GN=At2g19050 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.302e-19
Identity = 43/110 (39.09%), Postives = 69/110 (62.73%), Query Frame = 2
Query:  257 GDRISFSGQVKNYQNTVQQVVNLLGNQDQAANYLSRCIYSIGLGSNDYLNNYFQPLYYSTGRQYTPEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSPNQLAQN 586
            G+ ISF  Q+KN+++ +                L++C+Y+I +GSNDYLNNYF P  Y T ++++ ++YAD LI+ Y   L++LY  GARK  + GV ++GC+P  +A +
Sbjct:  124 GEIISFKKQIKNHRSMIMTA-------KVPEEKLNKCLYTINIGSNDYLNNYFMPAPYMTNKKFSFDEYADSLIRSYRSYLKSLYVLGARKVAVFGVSKLGCTPRMIASH 226          
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: GDL75_ARATH (GDSL esterase/lipase At5g08460 OS=Arabidopsis thaliana GN=At5g08460 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.075e-18
Identity = 41/108 (37.96%), Postives = 67/108 (62.04%), Query Frame = 2
Query:  257 GDRISFSGQVKNYQNTVQQVVNLLGNQDQAANYLSRCIYSIGLGSNDYLNNYFQPLYYSTGRQYTPEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSPNQLA 580
            G+R S   QV+N++ T+ ++   +  ++    Y+++ +  + LG+NDY+NNY +P  + +   Y P  +ADLL+  +T  L  LY  G RKFV+ GVG +GC P+QLA
Sbjct:  144 GERFSMGRQVENFEKTLMEISRSM-RKESVKEYMAKSLVVVSLGNNDYINNYLKPRLFLSSSIYDPTSFADLLLSNFTTHLLELYGKGFRKFVIAGVGPLGCIPDQLA 250          
The following BLAST results are available for this feature:
BLAST of CF504238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
GDL82_ARATH2.541e-4471.30GDSL esterase/lipase At5g45670 OS=Arabidopsis thal... [more]
GDL14_ARATH3.319e-4471.93GDSL esterase/lipase At1g29660 OS=Arabidopsis thal... [more]
GDL65_ARATH5.661e-4470.18GDSL esterase/lipase At4g18970 OS=Arabidopsis thal... [more]
GDL15_ARATH4.792e-4371.30GDSL esterase/lipase At1g29670 OS=Arabidopsis thal... [more]
GDL17_ARATH2.023e-2549.17GDSL esterase/lipase At1g33811 OS=Arabidopsis thal... [more]
GDL29_ARATH3.229e-2346.90GDSL esterase/lipase At1g71691 OS=Arabidopsis thal... [more]
GLIP7_ARATH8.794e-2144.04GDSL esterase/lipase 7 OS=Arabidopsis thaliana GN=... [more]
GDL37_ARATH1.658e-1940.00GDSL esterase/lipase At2g19060 OS=Arabidopsis thal... [more]
GDL36_ARATH6.302e-1939.09GDSL esterase/lipase At2g19050 OS=Arabidopsis thal... [more]
GDL75_ARATH1.075e-1837.96GDSL esterase/lipase At5g08460 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-727 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504238 ID=CF504238; Name=CF504238; organism=Citrus sinensis; type=EST; length=602bp
CTCAGAGGAGTCAATTATGCATCTGCAGCTGCTGGTATCAGGGAGGAAAC
TGGTCGACAGCTGGTAAATAAAAAGAAAATAATCAATCCCATTAATTAGT
TAATTTATTTATTTAATGCATGCATGCATATATGAACTTTAATAATGTCC
ATTTCATATCAACAAATAATTAACAATAACATGCATCAACTGATGAAGTG
TGAATCCTGAAATAACTAATGTTATACATACATGCACATGCAATATTATA
TTGCAGGGAGATCGAATCAGTTTTAGTGGGCAGGTAAAGAATTACCAAAA
CACGGTTCAGCAAGTAGTGAACTTACTAGGAAATCAAGATCAAGCTGCTA
ATTACCTGAGCCGATGCATATACTCAATCGGATTAGGCAGCAACGACTAC
CTCAACAACTACTTCCAGCCCCTCTATTATTCAACCGGTCGTCAATACAC
CCCCGAGCAGTATGCAGACCTTCTTATTCAACAGTACACTCAGCAACTTC
AGGCGTTGTACAACTATGGGGCAAGGAAATTTGTGTTGATTGGAGTGGGA
CAGATAGGGTGCAGCCCGAATCAATTGGCTCAAAACAGTCCAGATGGGAG
AA
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