CF504242

Overview
NameCF504242
Unique NameCF504242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1408 contig Csv1_Contig1408:276..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 6.420e-55
Identity = 87/130 (66.92%), Postives = 107/130 (82.31%), Query Frame = 2
Query:   83 AMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 472
            A WV+FEL+EYHL+TL+CH+ I+ LAVLFLWSNA+ FINKSPP+IP V +PE+ +L+ AS LR EINR  + LREIASGRDLKKFL  IAGLW+LS++G   NF+TL YI  VLL TVP+ Y+KYEDK+D
Sbjct:  110 AAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVD 239          

HSP 2 Score: 51.9878 bits (123), Expect = 6.420e-55
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = 1
Query:    1 VLGAGKPADIFLWRNKKISAGVLGGAT 81
            VLG GKPADIF+W+NKK+S GVLGGAT
Sbjct:   83 VLGGGKPADIFMWKNKKMSGGVLGGAT 109          
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 8.377e-55
Identity = 92/128 (71.88%), Postives = 107/128 (83.59%), Query Frame = 2
Query:   89 WVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 472
            W+LFELLEY+L+TL  HISIL+LAVLFLWS+ASTFI+KSP  IP V +PE  VL+ AS LR EINR   VLR+IASGRDLKKFL VIAGLW+LS VG+ CNF+TL YI  VLL T+PV+YEKYEDK+D
Sbjct:   87 WILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVD 214          

HSP 2 Score: 49.6766 bits (117), Expect = 8.377e-55
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 1
Query:    1 VLGAGKPADIFLWRNKKISAGVLGGAT 81
            + G GKPADIFLWRNKK+S GVLG AT
Sbjct:   58 LFGGGKPADIFLWRNKKVSGGVLGAAT 84          
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 5.360e-54
Identity = 85/130 (65.38%), Postives = 109/130 (83.85%), Query Frame = 2
Query:   83 AMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 472
            A+WVLFEL+EYHL++L+CHISIL+L  LFLWSNA T INK+ P+IP + +PE+  L  AS+LR E+N+A  +LR IA GRDLKKFL V+ GLW++SVVGNW NF+TL YI FV+LHTVP++YEK+EDK+D
Sbjct:   89 AIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVD 218          

HSP 2 Score: 46.2098 bits (108), Expect = 5.360e-54
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 1
Query:    1 VLGAGKPADIFLWRNKKISAGVLGGAT 81
            VLG GKPAD+FLWR+KK+S  VLG AT
Sbjct:   62 VLGGGKPADVFLWRDKKLSGAVLGVAT 88          
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 6.983e-54
Identity = 85/129 (65.89%), Postives = 109/129 (84.50%), Query Frame = 2
Query:   89 WVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDS 475
            WVLFEL+EYHL+TL+CH+ I++LAVLFLWSNA+ FI+KSPP+IP V +PE+ +L+ AS LR EINR ++ LREIASGRD+KKFL  IAGLW+LS++G   +F+TL YI  VLL TVP+ Y+KYEDK+DS
Sbjct:  108 WVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDS 236          

HSP 2 Score: 48.521 bits (114), Expect = 6.983e-54
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 1
Query:    1 VLGAGKPADIFLWRNKKISAGVLGGAT 81
            VLG GKPADIF+W++KK+S GV GGAT
Sbjct:   79 VLGGGKPADIFMWKDKKMSGGVFGGAT 105          
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 9.902e-53
Identity = 82/131 (62.60%), Postives = 103/131 (78.63%), Query Frame = 2
Query:   83 AMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDS 475
            A WVLFEL EYHL+  +CH +I +LA LFLWSNA TFI+KS P IP V +PE  +L+  S LR EINR L +LR IASG+D+KKF+ VIAGLW+LS++G+  NF+TLFY   VLL T+PV+YEKYEDK+D+
Sbjct:   89 ASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDA 219          

HSP 2 Score: 51.2174 bits (121), Expect = 9.902e-53
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 1
Query:    1 VLGAGKPADIFLWRNKKISAGVLGGATCN 87
            VLG GKPADIFLWRNKK+S GVLG  T +
Sbjct:   62 VLGGGKPADIFLWRNKKVSGGVLGAVTAS 90          
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.108e-51
Identity = 82/130 (63.08%), Postives = 105/130 (80.77%), Query Frame = 2
Query:   83 AMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 472
            A+WVLFEL+EYH ++LVCHI I +LA LFL SNA  F+NK+PP+IP + + E+  L   SALR E+N+A  +LR IA GRDLKKFL V+ GLW++SVVGNW NF+TL YI FV+LHTVP++YEK+EDK+D
Sbjct:   89 AIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVD 218          

HSP 2 Score: 45.0542 bits (105), Expect = 3.108e-51
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 1
Query:    1 VLGAGKPADIFLWRNKKISAGVLGGAT 81
            VLG G PAD+FLWR+KK+SA VLG AT
Sbjct:   62 VLGGGLPADVFLWRDKKLSASVLGVAT 88          
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.069e-38
Identity = 59/130 (45.38%), Postives = 92/130 (70.77%), Query Frame = 2
Query:   83 AMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 472
            A+WVLFE + +H ++LVC+  +L +   F+WSNAS F+N+S   +P + LP+ F  E   A+  E+NR L  L+++A   +LK+FL  + GLW+ ++VG+ CNF+T+ YI FV  HT+PV+YE+YED++D
Sbjct:   82 AIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVD 211          

HSP 2 Score: 45.0542 bits (105), Expect = 1.069e-38
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 1
Query:    1 VLGAGKPADIFLWRNKKISAGVLGGAT 81
            VLG GK AD+ LWRNKKISA VL GAT
Sbjct:   55 VLGGGKSADVLLWRNKKISASVLMGAT 81          
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 6.809e-38
Identity = 67/129 (51.94%), Postives = 93/129 (72.09%), Query Frame = 2
Query:   86 MWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 472
            +W+LF      L+T +C  SIL L + FLWSNA   +NKSP  +  + +PEK +L+ ASA+ +E+N A A LR IA  RD+K F+  + GLWL+SV+GNW +F++L YI FVL+HTVP++YEKYED+ID
Sbjct:   92 IWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEID 217          

HSP 2 Score: 41.2022 bits (95), Expect = 6.809e-38
Identity = 16/27 (59.26%), Postives = 21/27 (77.78%), Query Frame = 1
Query:    1 VLGAGKPADIFLWRNKKISAGVLGGAT 81
            VLG GKPAD+ LWR+KK++ G+L   T
Sbjct:   64 VLGGGKPADVLLWRDKKVTLGLLSAVT 90          
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.858e-28
Identity = 53/130 (40.77%), Postives = 79/130 (60.77%), Query Frame = 2
Query:   86 MWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDS 475
            +W L E++EY+ ITL+CH S+ S+   F+WS AS F+N   P IP V L E    + A +     N+ L  L ++A GRD   F      L+++S++G + NFV L +I FV + T+PV+YE YED +D+
Sbjct:   61 LWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDT 190          

HSP 2 Score: 30.8018 bits (68), Expect = 3.858e-28
Identity = 13/27 (48.15%), Postives = 18/27 (66.67%), Query Frame = 1
Query:    1 VLGAGKPADIFLWRNKKISAGVLGGAT 81
            + G GK ADI LWR  KI+A ++ G +
Sbjct:   33 IFGGGKVADILLWREPKIAATLVIGVS 59          
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.123e-24
Identity = 52/129 (40.31%), Postives = 78/129 (60.47%), Query Frame = 2
Query:   86 MWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 472
            +W LFE   Y     V +  +LS+ +LFLW+ ++   N+  P++P + + E+FV   A A+R  IN  LAV REI  GR+ K+   V   LW +S VGN+ NF+T+ Y+  VL   +P +YE+Y+D ID
Sbjct:   36 LWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLID 164          

HSP 2 Score: 22.7126 bits (47), Expect = 5.123e-24
Identity = 8/23 (34.78%), Postives = 14/23 (60.87%), Query Frame = 1
Query:   13 GKPADIFLWRNKKISAGVLGGAT 81
            G  AD+ +W+N++    +LG  T
Sbjct:   12 GSVADLIMWKNRRGGFLLLGSTT 34          
The following BLAST results are available for this feature:
BLAST of CF504242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLA_ARATH6.420e-5566.92Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH8.377e-5571.88Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH5.360e-5465.38Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH6.983e-5465.89Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH9.902e-5362.60Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH3.108e-5163.08Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH1.069e-3845.38Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH6.809e-3851.94Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH3.858e-2840.77Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLJ_ARATH5.123e-2440.31Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-731 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504242 ID=CF504242; Name=CF504242; organism=Citrus sinensis; type=EST; length=476bp
GTCCTCGGAGCTGGAAAACCTGCTGATATTTTCCTATGGAGGAACAAGAA
AATATCTGCTGGTGTGCTAGGTGGAGCCACCTGCAATGTGGGTTCTCTTT
GAGTTGCTGGAATACCATTTAATCACTTTGGTCTGCCATATATCGATTCT
CTCTCTGGCTGTTCTCTTCCTGTGGTCCAATGCATCCACATTTATCAACA
AATCACCGCCAGAGATTCCAGTTGTTACACTTCCTGAGAAGTTTGTCCTT
GAATTCGCCTCTGCCTTGAGGTATGAAATCAACCGAGCCTTGGCTGTCCT
GCGGGAAATTGCATCTGGAAGGGACTTGAAGAAGTTTCTTGGTGTCATTG
CTGGCTTGTGGCTTTTGTCTGTTGTCGGTAATTGGTGCAACTTCGTGACA
TTATTCTACATTGTATTTGTTTTGCTACACACCGTGCCCGTGATTTATGA
GAAGTACGAGGACAAGATTGATTCAT
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