CF504242
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 6.420e-55 Identity = 87/130 (66.92%), Postives = 107/130 (82.31%), Query Frame = 2 Query: 83 AMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 472 A WV+FEL+EYHL+TL+CH+ I+ LAVLFLWSNA+ FINKSPP+IP V +PE+ +L+ AS LR EINR + LREIASGRDLKKFL IAGLW+LS++G NF+TL YI VLL TVP+ Y+KYEDK+D Sbjct: 110 AAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVD 239 HSP 2 Score: 51.9878 bits (123), Expect = 6.420e-55 Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = 1 Query: 1 VLGAGKPADIFLWRNKKISAGVLGGAT 81 VLG GKPADIF+W+NKK+S GVLGGAT Sbjct: 83 VLGGGKPADIFMWKNKKMSGGVLGGAT 109
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 8.377e-55 Identity = 92/128 (71.88%), Postives = 107/128 (83.59%), Query Frame = 2 Query: 89 WVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 472 W+LFELLEY+L+TL HISIL+LAVLFLWS+ASTFI+KSP IP V +PE VL+ AS LR EINR VLR+IASGRDLKKFL VIAGLW+LS VG+ CNF+TL YI VLL T+PV+YEKYEDK+D Sbjct: 87 WILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVD 214 HSP 2 Score: 49.6766 bits (117), Expect = 8.377e-55 Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 1 Query: 1 VLGAGKPADIFLWRNKKISAGVLGGAT 81 + G GKPADIFLWRNKK+S GVLG AT Sbjct: 58 LFGGGKPADIFLWRNKKVSGGVLGAAT 84
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 5.360e-54 Identity = 85/130 (65.38%), Postives = 109/130 (83.85%), Query Frame = 2 Query: 83 AMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 472 A+WVLFEL+EYHL++L+CHISIL+L LFLWSNA T INK+ P+IP + +PE+ L AS+LR E+N+A +LR IA GRDLKKFL V+ GLW++SVVGNW NF+TL YI FV+LHTVP++YEK+EDK+D Sbjct: 89 AIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVD 218 HSP 2 Score: 46.2098 bits (108), Expect = 5.360e-54 Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 1 Query: 1 VLGAGKPADIFLWRNKKISAGVLGGAT 81 VLG GKPAD+FLWR+KK+S VLG AT Sbjct: 62 VLGGGKPADVFLWRDKKLSGAVLGVAT 88
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 6.983e-54 Identity = 85/129 (65.89%), Postives = 109/129 (84.50%), Query Frame = 2 Query: 89 WVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDS 475 WVLFEL+EYHL+TL+CH+ I++LAVLFLWSNA+ FI+KSPP+IP V +PE+ +L+ AS LR EINR ++ LREIASGRD+KKFL IAGLW+LS++G +F+TL YI VLL TVP+ Y+KYEDK+DS Sbjct: 108 WVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDS 236 HSP 2 Score: 48.521 bits (114), Expect = 6.983e-54 Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 1 Query: 1 VLGAGKPADIFLWRNKKISAGVLGGAT 81 VLG GKPADIF+W++KK+S GV GGAT Sbjct: 79 VLGGGKPADIFMWKDKKMSGGVFGGAT 105
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 9.902e-53 Identity = 82/131 (62.60%), Postives = 103/131 (78.63%), Query Frame = 2 Query: 83 AMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDS 475 A WVLFEL EYHL+ +CH +I +LA LFLWSNA TFI+KS P IP V +PE +L+ S LR EINR L +LR IASG+D+KKF+ VIAGLW+LS++G+ NF+TLFY VLL T+PV+YEKYEDK+D+ Sbjct: 89 ASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDA 219 HSP 2 Score: 51.2174 bits (121), Expect = 9.902e-53 Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 1 Query: 1 VLGAGKPADIFLWRNKKISAGVLGGATCN 87 VLG GKPADIFLWRNKK+S GVLG T + Sbjct: 62 VLGGGKPADIFLWRNKKVSGGVLGAVTAS 90
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 3.108e-51 Identity = 82/130 (63.08%), Postives = 105/130 (80.77%), Query Frame = 2 Query: 83 AMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 472 A+WVLFEL+EYH ++LVCHI I +LA LFL SNA F+NK+PP+IP + + E+ L SALR E+N+A +LR IA GRDLKKFL V+ GLW++SVVGNW NF+TL YI FV+LHTVP++YEK+EDK+D Sbjct: 89 AIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVD 218 HSP 2 Score: 45.0542 bits (105), Expect = 3.108e-51 Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 1 Query: 1 VLGAGKPADIFLWRNKKISAGVLGGAT 81 VLG G PAD+FLWR+KK+SA VLG AT Sbjct: 62 VLGGGLPADVFLWRDKKLSASVLGVAT 88
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 1.069e-38 Identity = 59/130 (45.38%), Postives = 92/130 (70.77%), Query Frame = 2 Query: 83 AMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 472 A+WVLFE + +H ++LVC+ +L + F+WSNAS F+N+S +P + LP+ F E A+ E+NR L L+++A +LK+FL + GLW+ ++VG+ CNF+T+ YI FV HT+PV+YE+YED++D Sbjct: 82 AIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVD 211 HSP 2 Score: 45.0542 bits (105), Expect = 1.069e-38 Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 1 Query: 1 VLGAGKPADIFLWRNKKISAGVLGGAT 81 VLG GK AD+ LWRNKKISA VL GAT Sbjct: 55 VLGGGKSADVLLWRNKKISASVLMGAT 81
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 6.809e-38 Identity = 67/129 (51.94%), Postives = 93/129 (72.09%), Query Frame = 2 Query: 86 MWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 472 +W+LF L+T +C SIL L + FLWSNA +NKSP + + +PEK +L+ ASA+ +E+N A A LR IA RD+K F+ + GLWL+SV+GNW +F++L YI FVL+HTVP++YEKYED+ID Sbjct: 92 IWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEID 217 HSP 2 Score: 41.2022 bits (95), Expect = 6.809e-38 Identity = 16/27 (59.26%), Postives = 21/27 (77.78%), Query Frame = 1 Query: 1 VLGAGKPADIFLWRNKKISAGVLGGAT 81 VLG GKPAD+ LWR+KK++ G+L T Sbjct: 64 VLGGGKPADVLLWRDKKVTLGLLSAVT 90
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 3.858e-28 Identity = 53/130 (40.77%), Postives = 79/130 (60.77%), Query Frame = 2 Query: 86 MWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDS 475 +W L E++EY+ ITL+CH S+ S+ F+WS AS F+N P IP V L E + A + N+ L L ++A GRD F L+++S++G + NFV L +I FV + T+PV+YE YED +D+ Sbjct: 61 LWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDT 190 HSP 2 Score: 30.8018 bits (68), Expect = 3.858e-28 Identity = 13/27 (48.15%), Postives = 18/27 (66.67%), Query Frame = 1 Query: 1 VLGAGKPADIFLWRNKKISAGVLGGAT 81 + G GK ADI LWR KI+A ++ G + Sbjct: 33 IFGGGKVADILLWREPKIAATLVIGVS 59
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.123e-24 Identity = 52/129 (40.31%), Postives = 78/129 (60.47%), Query Frame = 2 Query: 86 MWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 472 +W LFE Y V + +LS+ +LFLW+ ++ N+ P++P + + E+FV A A+R IN LAV REI GR+ K+ V LW +S VGN+ NF+T+ Y+ VL +P +YE+Y+D ID Sbjct: 36 LWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLID 164 HSP 2 Score: 22.7126 bits (47), Expect = 5.123e-24 Identity = 8/23 (34.78%), Postives = 14/23 (60.87%), Query Frame = 1 Query: 13 GKPADIFLWRNKKISAGVLGGAT 81 G AD+ +W+N++ +LG T Sbjct: 12 GSVADLIMWKNRRGGFLLLGSTT 34 The following BLAST results are available for this feature:
BLAST of CF504242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504242 ID=CF504242; Name=CF504242; organism=Citrus sinensis; type=EST; length=476bpback to top |