CF504246

Overview
NameCF504246
Unique NameCF504246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2574 contig Csv1_Contig2574:98..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504246 vs. ExPASy Swiss-Prot
Match: NFYA7_ARATH (Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.106e-34
Identity = 83/163 (50.92%), Postives = 102/163 (62.58%), Query Frame = 1
Query:  121 MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHXXXXXXXXXXXXXXRSIFXXXXXXXXXXXXXXXXXMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALKRARG 609
            MTSS+H++SDN  + E+++  +S  Q   P+   ++ SI T  V       G  +              RSIF                  VHLQLMG+QQ GVPLP+DAVEEPVFVNAKQYHGILRRRQSRA+ ES+NKV+KSRKPYLHESRHLHA++R RG
Sbjct:    1 MTSSIHELSDNIGSHEKQEQRDSHFQPPIPS-ARNYESIVTSLVY---SDPGTTNSMAPGQYPYPDPYYRSIFAPPPQPYTG---------VHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRG 150          
BLAST of CF504246 vs. ExPASy Swiss-Prot
Match: NFYA4_ARATH (Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.138e-32
Identity = 78/163 (47.85%), Postives = 100/163 (61.35%), Query Frame = 1
Query:  121 MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHXXXXXXXXXXXXXXRSIFXXXXXXXXXXXXXXXXXMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALKRARG 609
            MTSSVH++SDN+++  +++ P+SQ +   P+ G S  SI T +V       G                 RS+F                  V LQLMG+QQ GVPL  DAVEEPVFVNAKQYHGILRRRQSRAK E+ N+ +K++KPY+HESRHLHA++R RG
Sbjct:    1 MTSSVHELSDNNESHAKKERPDSQTRPQVPS-GRSSESIDTNSVYSEPMAHGL--------YPYPDPYYRSVFAQQAYLPHPYPG------VQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRG 148          
BLAST of CF504246 vs. ExPASy Swiss-Prot
Match: NFYA5_ARATH (Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.691e-22
Identity = 50/72 (69.44%), Postives = 60/72 (83.33%), Query Frame = 1
Query:  397 HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALKRARG 609
            HL++MG+  + VPLP    E EP+FVNAKQYH ILRRR+ RAK E++NK++K RKPYLHESRHLHALKRARG
Sbjct:  157 HLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPYLHESRHLHALKRARG 228          
BLAST of CF504246 vs. ExPASy Swiss-Prot
Match: NFYA8_ARATH (Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.454e-20
Identity = 46/65 (70.77%), Postives = 55/65 (84.62%), Query Frame = 1
Query:  418 QQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALKRARG 609
            Q   VPLP D +E EPVFVNAKQ+H I+RRRQ RAK E++NK++K+RKPYLHESRH+HALKR RG
Sbjct:  158 QMTRVPLPFDLIENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRG 222          
BLAST of CF504246 vs. ExPASy Swiss-Prot
Match: NFYA9_ARATH (Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.313e-19
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1
Query:  412 GIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALKRARG 609
            G+  + +PLP +  +EPVFVNAKQY  ILRRRQ+RAKAE E K++KSRKPYLHESRH HA++R RG
Sbjct:  151 GMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRG 216          
BLAST of CF504246 vs. ExPASy Swiss-Prot
Match: NFYA6_ARATH (Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.239e-19
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 1
Query:  397 HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALKRARG 609
            H Q+ G+  + +PLP +  E EP+FVNAKQY  ILRRR+ RAK E++NK++K RKPYLHESRHLHALKR RG
Sbjct:  150 HPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYLHESRHLHALKRVRG 221          
BLAST of CF504246 vs. ExPASy Swiss-Prot
Match: NFYA3_ARATH (Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.239e-19
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 1
Query:  403 QLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALKRARG 609
            Q++ +    VPLP +  E +PVFVNAKQYH I+RRRQ RAK E++NK++++RKPYLHESRH+HALKR RG
Sbjct:  160 QMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRG 229          
BLAST of CF504246 vs. ExPASy Swiss-Prot
Match: NFYA1_ARATH (Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.895e-18
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1
Query:  409 MGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALKRAR 606
            +G+ +    LP D  +EPV+VNAKQY GILRRR++RAKAE E KV++ RKPYLHESRH HA++RAR
Sbjct:  156 LGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRAR 221          
BLAST of CF504246 vs. ExPASy Swiss-Prot
Match: NFYA_RAT (Nuclear transcription factor Y subunit alpha OS=Rattus norvegicus GN=Nfya PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.271e-14
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  430 VPLPTDAV--EEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALKRARG 609
            +PLP   +  EEP++VNAKQYH IL+RRQ+RAK E+E K+ K R+ YLHESRH HA+ R RG
Sbjct:  246 IPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRG 307          
BLAST of CF504246 vs. ExPASy Swiss-Prot
Match: NFYA_MOUSE (Nuclear transcription factor Y subunit alpha OS=Mus musculus GN=Nfya PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.271e-14
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  430 VPLPTDAV--EEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALKRARG 609
            +PLP   +  EEP++VNAKQYH IL+RRQ+RAK E+E K+ K R+ YLHESRH HA+ R RG
Sbjct:  251 IPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRG 312          
The following BLAST results are available for this feature:
BLAST of CF504246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
NFYA7_ARATH1.106e-3450.92Nuclear transcription factor Y subunit A-7 OS=Arab... [more]
NFYA4_ARATH5.138e-3247.85Nuclear transcription factor Y subunit A-4 OS=Arab... [more]
NFYA5_ARATH3.691e-2269.44Nuclear transcription factor Y subunit A-5 OS=Arab... [more]
NFYA8_ARATH3.454e-2070.77Nuclear transcription factor Y subunit A-8 OS=Arab... [more]
NFYA9_ARATH1.313e-1966.67Nuclear transcription factor Y subunit A-9 OS=Arab... [more]
NFYA6_ARATH2.239e-1963.89Nuclear transcription factor Y subunit A-6 OS=Arab... [more]
NFYA3_ARATH2.239e-1962.86Nuclear transcription factor Y subunit A-3 OS=Arab... [more]
NFYA1_ARATH1.895e-1863.64Nuclear transcription factor Y subunit A-1 OS=Arab... [more]
NFYA_RAT1.271e-1461.29Nuclear transcription factor Y subunit alpha OS=Ra... [more]
NFYA_MOUSE1.271e-1461.29Nuclear transcription factor Y subunit alpha OS=Mu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-735 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504246 ID=CF504246; Name=CF504246; organism=Citrus sinensis; type=EST; length=610bp
TTATAATTTCACTTTCACCTGCAGAGCAGCAGAGGAGAGCCAGAAACAGC
CTGCTATAGAACACAGTGCCTAGTTTCTCTATAAGATTTGAGTTGCAGAT
TCTATATGCGTGACGGCCTCATGACTTCCTCTGTGCATGATATGTCCGAT
AACAGTGACGCTGATGAGCAGCGGAAGCATCCAGAATCCCAGTTACAGTC
CTCAACACCTGCAATGGGAATGTCTCATCCAAGCATCACAACTCCCAATG
TTCAATATGCAACGCATCAAGTCGGGGCAGGCCATGCTATGGCACCAGCA
GCTTACCCCTATCCAGATCCGTACTACAGAAGCATATTTGCTCCCTATGA
TGCACAACCATATCCTCCACAGCCATATGGTGGACAACCAATGGTCCATC
TTCAGTTGATGGGAATTCAGCAAGCTGGAGTTCCTTTGCCAACAGATGCA
GTTGAGGAGCCCGTGTTTGTCAATGCCAAACAATATCATGGCATCTTGCG
ACGACGACAATCTCGTGCAAAAGCTGAATCTGAAAACAAAGTTTTAAAGT
CTCGAAAGCCATACTTGCATGAATCTCGACATCTGCATGCATTAAAAAGA
GCTAGGGGAT
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