CF504247

Overview
NameCF504247
Unique NameCF504247
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length453
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYLC_HUMAN (Leucyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 8.500e-44
Identity = 85/153 (55.56%), Postives = 115/153 (75.16%), Query Frame = 1
Query:    1 TFCIYNHTAIMSQRH--WPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEY 453
            ++ +YNH A+  ++   WP   R NGH++LNSEKMSKSTGNF TL QAI++FSAD  R +LADAGD V+DANFV   A+ GILRL   + W++E++A   SLR+GP ST+ DRVF +E+N  +  TDQ+Y+  MF+EALKTGF++ QAA+D+Y
Sbjct:  683 SYYLYNHVAMWPEQSDKWPTAVRANGHLLLNSEKMSKSTGNFLTLTQAIDKFSADGMRLALADAGDTVEDANFVEAMADAGILRLYTWVEWVKEMVANWDSLRSGPASTFNDRVFASELNAGIIKTDQNYEKMMFKEALKTGFFEFQAAKDKY 835          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYLC_MOUSE (Leucyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Lars PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 1.450e-43
Identity = 85/153 (55.56%), Postives = 115/153 (75.16%), Query Frame = 1
Query:    1 TFCIYNHTAIMSQRH--WPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEY 453
            ++ IYNH A+  ++   WP   R NGH++LNSEKMSKSTGNF TL QA+++FSAD  R +LADAGD V+DANFV   A+ GILRL   + W++E+LA  SSLR+GP  ++ DRVF +E+N  +  TDQ+Y+  MF+EALKTGF++ QAA+D+Y
Sbjct:  685 SYYIYNHVAMWPEQSDKWPVSVRANGHLLLNSEKMSKSTGNFLTLSQAVDKFSADGMRLALADAGDTVEDANFVEAMADAGILRLYTWVEWVKEMLASCSSLRSGPADSFNDRVFASEMNAGIIKTDQNYEKMMFKEALKTGFFEFQAAKDKY 837          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYLC_PONAB (Leucyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=LARS PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.894e-43
Identity = 84/153 (54.90%), Postives = 115/153 (75.16%), Query Frame = 1
Query:    1 TFCIYNHTAIMSQRH--WPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEY 453
            ++ +YNH A+  ++   WP   R NGH++LNSEKMSKSTGNF TL QAI++FSAD  R +LADAGD V+DANFV   A+ GILRL   + W++E++A   SLR+GP +T+ DRVF +E+N  +  TDQ+Y+  MF+EALKTGF++ QAA+D+Y
Sbjct:  683 SYYLYNHVAMWPEQSDKWPTAVRANGHLLLNSEKMSKSTGNFLTLTQAIDKFSADGMRLALADAGDTVEDANFVEAMADAGILRLYTWVEWVKEMVANWDSLRSGPANTFNDRVFASELNAGIIKTDQNYEKMMFKEALKTGFFEFQAAKDKY 835          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYLC_SCHPO (Putative leucyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=SPAC26F1.13c PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.094e-42
Identity = 83/151 (54.97%), Postives = 110/151 (72.85%), Query Frame = 1
Query:    1 TFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEY 453
            TFC+Y HTAI  +++WP+G R NGH+++N EKMSKSTGNF TL +A ++F ADATR +LADAGD VDDANF    AN+ ILRL  + AW +E++    +LRTG P  + D+VFENEIN  +E + + +   +F+ ALK+ FYDLQ ARD Y
Sbjct:  706 TFCLYTHTAIFDEKYWPKGIRANGHLLMNGEKMSKSTGNFMTLHEATKKFGADATRLALADAGDTVDDANFEEALANSAILRLYTQEAWCKEMMENLDNLRTG-PYNFHDKVFENEINQLIESSREAFSATLFKAALKSCFYDLQNARDWY 855          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYLC_CAEEL (Leucyl-tRNA synthetase OS=Caenorhabditis elegans GN=lrs-1 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 3.696e-39
Identity = 79/154 (51.30%), Postives = 109/154 (70.78%), Query Frame = 1
Query:    1 TFCIYNHTAIM--SQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAV-ESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEY 453
            T+ ++NH AI       WP+G R NGH++LN+EKMSKSTGNF TL++AIE+FSAD  R SLADAGDG++DANFV+  A+  ILRL   I W++E++   ++ L       +ADRVF NE+N  +  T+Q+Y+   F++ALKTGF++ QA RD Y
Sbjct:  685 TYLLFNHAAIWPTDTSKWPKGIRANGHLLLNNEKMSKSTGNFMTLEEAIEKFSADGMRLSLADAGDGLEDANFVYAMADAAILRLFTMIEWIKEMIEQRDAGLLRKDAKKFADRVFANEMNSLIAATEQNYEATNFKDALKTGFFEYQAIRDTY 838          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYLC_YEAST (Leucyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=CDC60 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 5.337e-38
Identity = 78/151 (51.66%), Postives = 100/151 (66.23%), Query Frame = 1
Query:    1 TFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEY 453
            TF IY H A+  ++ WP+G R NGH+MLN+ KMSKSTGNF TL+Q +E+F ADA R + ADAGD V+DANF    AN  ILRL     W EE+   ES+LRTG  + + D  FE+E+N  +E T + Y    ++ ALK G +D QAARD Y
Sbjct:  698 TFFIYTHVALFPKKFWPKGIRANGHLMLNNSKMSKSTGNFMTLEQTVEKFGADAARIAFADAGDTVEDANFDESNANAAILRLFNLKEWAEEI-TKESNLRTGEITDFFDIAFEHEMNALIEKTYEQYALTNYKNALKYGLFDFQAARDYY 847          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYLC_NEUCR (Leucyl-tRNA synthetase, cytoplasmic OS=Neurospora crassa GN=leu-6 PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 2.242e-36
Identity = 72/151 (47.68%), Postives = 98/151 (64.90%), Query Frame = 1
Query:    1 TFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEY 453
            TF +YNH A+  + +WP+  R NGH+ LN EKMSKSTGNF TL   ++++ ADA R +LADAGDG+ D+NFV D A+  ILR      W+EE L  + SLRTG  +++ D +F+NE+N  V    +HY+   ++ ALK   YD   ARD Y
Sbjct:  726 TFWLYNHIALFPREYWPKSVRANGHLQLNGEKMSKSTGNFMTLDDVVKKYGADAARVALADAGDGISDSNFVEDVADNTILRFYTNKEWIEETLK-DESLRTGELNSFQDALFDNEMNALVNEARKHYEETSYKLALKAAHYDFLNARDMY 875          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYLC_DICDI (Leucyl-tRNA synthetase, cytoplasmic OS=Dictyostelium discoideum GN=leuS PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.522e-35
Identity = 72/151 (47.68%), Postives = 98/151 (64.90%), Query Frame = 1
Query:    1 TFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEY 453
            TF +Y H AI  ++  P+  R NG + LN EKMSKSTGNF TL  ++ +FSAD TR +LADAGD ++DANFV  TA T +L+L  +I W++E L      R+GP     D +FE+EIN  +  +++ Y+   FR+AL   F+DLQ ARD Y
Sbjct:  680 TFFLYTHAAIFEKKFQPKSIRANGFVNLNGEKMSKSTGNFLTLVDSVAKFSADGTRVALADAGDSIEDANFVDQTAVTSLLKLHTQIQWVQETLDSIDKFRSGPLDRIQDTIFESEINNIIVESEKAYQKTNFRDALHLVFFDLQNARDHY 830          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYLC_ENCCU (Probable leucyl-tRNA synthetase, cytoplasmic OS=Encephalitozoon cuniculi GN=ECU06_0280 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 8.837e-25
Identity = 55/157 (35.03%), Postives = 93/157 (59.24%), Query Frame = 1
Query:    4 FCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVES-------SLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEY 453
            F ++NH A+  ++HWP+    NGH+MLNSEKMSKS+GN+ T+ +++++F   +TR  LA  GDG +DANFV   AN  +L+L   +  +EE+    S        ++      +ADR     I++ V    + +++  +R+ +K GFY++  A++ Y
Sbjct:  514 FFLFNHVALFEEKHWPKRMFTNGHLMLNSEKMSKSSGNYMTVDESLDKFGVSSTRMCLAVCGDGNEDANFVESNANAFVLKLYSYVKMIEELCTGRSLNPCILDLMKGYGEMGFADRFLMQTISMNVAHATRAHEDMTYRDVVKYGFYEMVHAKEMY 670          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYLC_NOSCE (Probable leucyl-tRNA synthetase, cytoplasmic OS=Nosema ceranae (strain BRL01) GN=NCER_100842 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.661e-21
Identity = 53/146 (36.30%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    4 FCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRL---TKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDL 432
            F ++NH A+  +++WP+    NGH+MLN EKMSKSTGNF ++  A+ ++   ATR  LA  GD  DDANFV D AN  IL++    KEI  + E++  +S   T    + AD +    +++ V      Y +  + + +K  F+++
Sbjct:  536 FFMFNHVALFDEKYWPKRIFTNGHLMLNKEKMSKSTGNFLSVDDALLKYGKSATRMCLAVCGDTNDDANFVEDNANLFILKIYTFVKEIQKLNELVRKKSENETIASYSNADVLLLETVSVNVTEALNAYNSMKYSDVVKFSFFEM 681          
The following BLAST results are available for this feature:
BLAST of CF504247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
SYLC_HUMAN8.500e-4455.56Leucyl-tRNA synthetase, cytoplasmic OS=Homo sapien... [more]
SYLC_MOUSE1.450e-4355.56Leucyl-tRNA synthetase, cytoplasmic OS=Mus musculu... [more]
SYLC_PONAB1.894e-4354.90Leucyl-tRNA synthetase, cytoplasmic OS=Pongo abeli... [more]
SYLC_SCHPO2.094e-4254.97Putative leucyl-tRNA synthetase, cytoplasmic OS=Sc... [more]
SYLC_CAEEL3.696e-3951.30Leucyl-tRNA synthetase OS=Caenorhabditis elegans G... [more]
SYLC_YEAST5.337e-3851.66Leucyl-tRNA synthetase, cytoplasmic OS=Saccharomyc... [more]
SYLC_NEUCR2.242e-3647.68Leucyl-tRNA synthetase, cytoplasmic OS=Neurospora ... [more]
SYLC_DICDI5.522e-3547.68Leucyl-tRNA synthetase, cytoplasmic OS=Dictyosteli... [more]
SYLC_ENCCU8.837e-2535.03Probable leucyl-tRNA synthetase, cytoplasmic OS=En... [more]
SYLC_NOSCE2.661e-2136.30Probable leucyl-tRNA synthetase, cytoplasmic OS=No... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-736 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504247 ID=CF504247; Name=CF504247; organism=Citrus sinensis; type=EST; length=453bp
ACTTTTTGCATTTATAACCACACAGCAATCATGTCCCAGCGCCACTGGCC
TCGTGGATTTAGGTGTAATGGTCACATTATGCTTAATTCTGAGAAGATGT
CCAAGTCTACCGGGAATTTTAGGACGTTGAAGCAGGCCATTGAGGAATTC
TCTGCAGATGCCACACGATTTTCTCTGGCTGATGCTGGAGATGGTGTAGA
TGATGCAAATTTCGTATTTGACACTGCAAATACTGGAATCCTTCGGCTCA
CCAAGGAGATTGCATGGATGGAGGAGGTACTGGCTGTGGAATCGTCTTTG
AGAACTGGTCCACCATCTACTTATGCTGATAGGGTGTTTGAGAACGAGAT
AAATATTGCTGTTGAAATGACTGATCAGCATTACAAGAACTACATGTTCC
GAGAAGCTCTAAAAACGGGCTTTTATGATCTTCAAGCTGCAAGGGATGAA
TAT
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