CF504249

Overview
NameCF504249
Unique NameCF504249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9283 contig Csv1_Contig9283:53..507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504249 vs. ExPASy Swiss-Prot
Match: P2C60_ARATH (Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 1.760e-65
Identity = 114/151 (75.50%), Postives = 131/151 (86.75%), Query Frame = 1
Query:    1 GVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEIYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWASEEGPHS 453
            G+YLSTPKT+KFSEDG+N  +RYGLSSMQGWRA+MEDAHAA  DLD +TSF GVYDGHGGK V+KFCAKYLHQQVL  E Y+AGD+ TS QKAF RMDEMM+GQRGWRELA+LGDK++KFSGMIEG IWSP+ G++ +  D WA EEGPHS
Sbjct:    2 GIYLSTPKTDKFSEDGENHKLRYGLSSMQGWRASMEDAHAAILDLDDNTSFLGVYDGHGGKVVSKFCAKYLHQQVLSDEAYAAGDVGTSLQKAFFRMDEMMQGQRGWRELAVLGDKINKFSGMIEGLIWSPRSGDSANKPDAWAFEEGPHS 152          
BLAST of CF504249 vs. ExPASy Swiss-Prot
Match: P2C21_ARATH (Probable protein phosphatase 2C 21 OS=Arabidopsis thaliana GN=PPC4-2 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 3.002e-65
Identity = 111/151 (73.51%), Postives = 129/151 (85.43%), Query Frame = 1
Query:    1 GVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEIYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWASEEGPHS 453
            G YLS+PKTEK SEDG+N+ +R+GLSSMQGWRATMEDAHAA  DLD  TSFFGVYDGHGGK VAKFCAKYLHQQV+ +E Y  GD+ TS ++AF RMD+MM+GQRGWRELA+LGDKM+KFSGMIEGFIWSP+ G+ N+  D W  E+GPHS
Sbjct:    2 GTYLSSPKTEKLSEDGENDKLRFGLSSMQGWRATMEDAHAAILDLDDKTSFFGVYDGHGGKVVAKFCAKYLHQQVISNEAYKTGDVETSLRRAFFRMDDMMQGQRGWRELAVLGDKMNKFSGMIEGFIWSPRSGDTNNQPDSWPLEDGPHS 152          
BLAST of CF504249 vs. ExPASy Swiss-Prot
Match: P2C58_ORYSJ (Probable protein phosphatase 2C 58 OS=Oryza sativa subsp. japonica GN=Os06g0651600 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 3.921e-65
Identity = 111/151 (73.51%), Postives = 131/151 (86.75%), Query Frame = 1
Query:    1 GVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEIYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWASEEGPHS 453
            GVYLSTPKTEK SEDG+N+ +++GLSSMQGWRATMEDAH+A  D+D+ TSFFGV+DGHGG+ VAKFCAKYLH++VL+ E YSAGDL  +A KAF RMDEMMRGQRGWREL  LGDK+++ SGMIEG IWSP+G ++ND  DDWA EEGPHS
Sbjct:    2 GVYLSTPKTEKLSEDGENDKLKFGLSSMQGWRATMEDAHSALLDIDNDTSFFGVFDGHGGRVVAKFCAKYLHREVLRSEAYSAGDLGNAAHKAFFRMDEMMRGQRGWRELQALGDKINQISGMIEGLIWSPRGSDSNDQHDDWAFEEGPHS 152          
BLAST of CF504249 vs. ExPASy Swiss-Prot
Match: P2C11_ORYSJ (Probable protein phosphatase 2C 11 OS=Oryza sativa subsp. japonica GN=Os02g0180000 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 8.176e-63
Identity = 107/151 (70.86%), Postives = 129/151 (85.43%), Query Frame = 1
Query:    1 GVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEIYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWASEEGPHS 453
            G+YLSTPKT+KFSEDG+N+ ++ GLSSMQGWRA MEDAH+A  +LD+ TSFFGV+DGHGG+ VAKFCAKYLH QVL+ E YSAGDL T+  +AF RMDEMMRGQRGWREL+ LGDK++K  GMIEG IWSP+G ++N+  DDW+ EEGPHS
Sbjct:    2 GIYLSTPKTDKFSEDGENDKLKLGLSSMQGWRANMEDAHSALLNLDNETSFFGVFDGHGGRVVAKFCAKYLHSQVLRSEAYSAGDLGTAVHRAFFRMDEMMRGQRGWRELSALGDKINKIGGMIEGLIWSPRGSDSNNGQDDWSFEEGPHS 152          
BLAST of CF504249 vs. ExPASy Swiss-Prot
Match: P2C70_ORYSJ (Probable protein phosphatase 2C 70 OS=Oryza sativa subsp. japonica GN=Os09g0558000 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 5.859e-61
Identity = 110/151 (72.85%), Postives = 126/151 (83.44%), Query Frame = 1
Query:    1 GVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEIYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWASEEGPHS 453
            GVYLSTPKTEK+S +G N+ +RYGL+SMQGWR TMEDAH A P LD  TSFFGVYDGHGGKAV+KFCAK+LH QVLK+E YS+GDL TS  K+F RMDEMM+GQRGWRELA LGDK  KF+GM+EG IWSPK GE++   D W +EEGPHS
Sbjct:    2 GVYLSTPKTEKYSGEGGNDRLRYGLASMQGWRTTMEDAHTALPRLDECTSFFGVYDGHGGKAVSKFCAKHLHLQVLKNEAYSSGDLATSVLKSFFRMDEMMKGQRGWRELAELGDKGQKFTGMLEGIIWSPKPGESDKPEDTW-TEEGPHS 151          
BLAST of CF504249 vs. ExPASy Swiss-Prot
Match: P2C17_ORYSJ (Probable protein phosphatase 2C 17 OS=Oryza sativa subsp. japonica GN=Os02g0599150 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.481e-24
Identity = 56/113 (49.56%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   13 STPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLD--SSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEIYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGD 345
            S P   KF+ + +N+ ++Y +SSMQGW   MEDAHAA  +LD  +STSFFGVYDGHGG  VA +CAK  H ++  HE Y   DL+ +    FL MDE ++    WREL I  D
Sbjct:   28 SLPVESKFTFEEENDRIKYVVSSMQGWGEKMEDAHAAILNLDDTTSTSFFGVYDGHGGAEVALYCAKQFHIELCNHEDYH-NDLINALDNVFLSMDENLQQSDAWRELVIPHD 139          
BLAST of CF504249 vs. ExPASy Swiss-Prot
Match: P2C16_ORYSJ (Probable protein phosphatase 2C 16 OS=Oryza sativa subsp. japonica GN=Os02g0598400 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.481e-24
Identity = 56/113 (49.56%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   13 STPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLD--SSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEIYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGD 345
            S P   KF+ + +N+ ++Y +SSMQGW   MEDAHAA  +LD  +STSFFGVYDGHGG  VA +CAK  H ++  HE Y   DL+ +    FL MDE ++    WREL I  D
Sbjct:    4 SLPVESKFTFEEENDRIKYVVSSMQGWGEKMEDAHAAILNLDDATSTSFFGVYDGHGGAEVALYCAKQFHIELCNHEDYH-NDLINALDNVFLSMDENLQQSDAWRELVIPHD 115          
BLAST of CF504249 vs. ExPASy Swiss-Prot
Match: P2C42_ORYSJ (Probable protein phosphatase 2C 42 OS=Oryza sativa subsp. japonica GN=Os04g0500900 PE=2 SV=4)

HSP 1 Score: 108.612 bits (270), Expect = 1.276e-23
Identity = 55/113 (48.67%), Postives = 77/113 (68.14%), Query Frame = 1
Query:   10 LSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDS--STSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEIYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILG 342
            L  P   K +  G N  + Y  S+MQG+R+TMEDAHA   +LD+  +TSFFGVYDGHGG AVA++CA +LH +VL+ E +S+ +L  + +++F RMDEM+R Q   +EL   G
Sbjct:    8 LQVPDITKSTHSGGNTVLAYASSAMQGYRSTMEDAHATIENLDALTNTSFFGVYDGHGGSAVARYCANHLHNKVLEQEDFSS-NLANALRQSFFRMDEMLRNQAASKELTEYG 119          
BLAST of CF504249 vs. ExPASy Swiss-Prot
Match: P2C20_ORYSJ (Probable protein phosphatase 2C 20 OS=Oryza sativa subsp. japonica GN=Os02g0600000 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 8.271e-23
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   13 STPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSS-TSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEIYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAI 336
            S P   KF+++ +N+ ++Y +SSMQGW   MEDAHAA  +LD + TSFFGVYDGHGG  VA +CAK  H ++  HE Y + +L  + + AF  MDE ++    WREL I
Sbjct:   53 SLPVESKFTDEKENDRIKYVVSSMQGWGEKMEDAHAAILNLDDTMTSFFGVYDGHGGAEVASYCAKRFHIELCNHEDYDS-NLSNAMRSAFYSMDEDLQLSDAWRELVI 160          
BLAST of CF504249 vs. ExPASy Swiss-Prot
Match: P2C19_ORYSJ (Probable protein phosphatase 2C 19 OS=Oryza sativa subsp. japonica GN=Os02g0599700 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 8.271e-23
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   13 STPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSS-TSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEIYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAI 336
            S P   KF+++ +N+ ++Y +SSMQGW   MEDAHAA  +LD + TSFFGVYDGHGG  VA +CAK  H ++  HE Y + +L  + + AF  MDE ++    WREL I
Sbjct:  248 SLPVESKFTDEKENDRIKYVVSSMQGWGEKMEDAHAAILNLDDTMTSFFGVYDGHGGAEVASYCAKRFHIELCNHEDYDS-NLSNAMRSAFYSMDEDLQLSDAWRELVI 355          
The following BLAST results are available for this feature:
BLAST of CF504249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
P2C60_ARATH1.760e-6575.50Probable protein phosphatase 2C 60 OS=Arabidopsis ... [more]
P2C21_ARATH3.002e-6573.51Probable protein phosphatase 2C 21 OS=Arabidopsis ... [more]
P2C58_ORYSJ3.921e-6573.51Probable protein phosphatase 2C 58 OS=Oryza sativa... [more]
P2C11_ORYSJ8.176e-6370.86Probable protein phosphatase 2C 11 OS=Oryza sativa... [more]
P2C70_ORYSJ5.859e-6172.85Probable protein phosphatase 2C 70 OS=Oryza sativa... [more]
P2C17_ORYSJ7.481e-2449.56Probable protein phosphatase 2C 17 OS=Oryza sativa... [more]
P2C16_ORYSJ7.481e-2449.56Probable protein phosphatase 2C 16 OS=Oryza sativa... [more]
P2C42_ORYSJ1.276e-2348.67Probable protein phosphatase 2C 42 OS=Oryza sativa... [more]
P2C20_ORYSJ8.271e-2348.62Probable protein phosphatase 2C 20 OS=Oryza sativa... [more]
P2C19_ORYSJ8.271e-2348.62Probable protein phosphatase 2C 19 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-738 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504249 ID=CF504249; Name=CF504249; organism=Citrus sinensis; type=EST; length=455bp
GGGGTATATCTGAGCACCCCCAAGACTGAGAAGTTCTCGGAGGATGGTCA
AAATGAGAATGTTCGATATGGATTGTCGTCGATGCAGGGGTGGCGTGCGA
CCATGGAAGATGCTCATGCAGCTTATCCAGATTTGGACAGTTCTACATCT
TTCTTTGGTGTTTATGATGGCCACGGTGGTAAAGCAGTGGCCAAATTTTG
TGCCAAGTATCTTCACCAGCAGGTGCTCAAACATGAAATTTATTCAGCTG
GAGATTTAGTCACTTCAGCACAGAAAGCTTTTCTCAGAATGGATGAGATG
ATGCGTGGACAAAGGGGATGGAGAGAATTAGCTATACTGGGAGATAAAAT
GGACAAGTTTTCTGGCATGATTGAGGGGTTCATATGGTCTCCTAAGGGTG
GTGAAGCCAATGATCATTTTGACGATTGGGCATCGGAGGAGGGTCCTCAC
TCAGA
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