CF504250

Overview
NameCF504250
Unique NameCF504250
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length370
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504250 vs. ExPASy Swiss-Prot
Match: DNJC8_HUMAN (DnaJ homolog subfamily C member 8 OS=Homo sapiens GN=DNAJC8 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12
Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = 2 
Query:    5 FKLNPFEYLNLPFDVTPDDIKKQYRKLSLLVHPDKCKH--PQAKEAFGALAKAQQLLSDEQERDYILTQVHAAKGELR---AKRKKQLKKDAASKI 277
            F LNPFE L +  +VT ++IKK++R+LS+LVHPDK +    +A++AF A+ KA +LL D++++   L  + A K  +     +RKKQLKK+    I
Sbjct:   54 FNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKKQLKKEGKPTI 149
[Close]
BLAST of CF504250 vs. ExPASy Swiss-Prot
Match: DNJC8_RAT (DnaJ homolog subfamily C member 8 OS=Rattus norvegicus GN=Dnajc8 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 40/91 (43.96%), Postives = 62/91 (68.13%), Query Frame = 2 
Query:    5 FKLNPFEYLNLPFDVTPDDIKKQYRKLSLLVHPDKCKH--PQAKEAFGALAKAQQLLSDEQERDYILTQVHAAKGELR---AKRKKQLKKD 262
            F LNPFE L +  +VT ++IKK++R+LS+LVHPDK +    +A++AF A+ KA +LL D++++   L  + A K  +     +RKKQLKK+
Sbjct:   54 FNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKKQLKKE 144
[Close]
BLAST of CF504250 vs. ExPASy Swiss-Prot
Match: DNJC8_MOUSE (DnaJ homolog subfamily C member 8 OS=Mus musculus GN=Dnajc8 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 40/91 (43.96%), Postives = 62/91 (68.13%), Query Frame = 2 
Query:    5 FKLNPFEYLNLPFDVTPDDIKKQYRKLSLLVHPDKCKH--PQAKEAFGALAKAQQLLSDEQERDYILTQVHAAKGELR---AKRKKQLKKD 262
            F LNPFE L +  +VT ++IKK++R+LS+LVHPDK +    +A++AF A+ KA +LL D++++   L  + A K  +     +RKKQLKK+
Sbjct:   54 FNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKKQLKKE 144
The following BLAST results are available for this feature:
BLAST of CF504250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DNJC8_HUMAN1.034e-1242.71DnaJ homolog subfamily C member 8 OS=Homo sapiens ... [more]
DNJC8_RAT1.350e-1243.96DnaJ homolog subfamily C member 8 OS=Rattus norveg... [more]
DNJC8_MOUSE1.350e-1243.96DnaJ homolog subfamily C member 8 OS=Mus musculus ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-739 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504250 ID=CF504250; Name=CF504250; organism=Citrus sinensis; type=EST; length=370bp
GTGCTTCAAGCTTAATCCATTTGAGTATCTAAACCTACCATTTGATGTAA
CTCCAGATGATATAAAAAAGCAGTATCGCAAGCTATCCTTGCTGGTTCAC
CCTGATAAGTGCAAGCATCCACAAGCAAAGGAAGCTTTTGGAGCATTGGC
AAAAGCCCAGCAACTATTATCAGATGAACAAGAAAGGGACTATATTCTAA
CCCAGGTCCATGCAGCAAAAGGTGAACTTAGAGCCAAAAGAAAGAAGCAG
TTGAAGAAAGATGCAGCTTCGAAAATAAAATCATTAGTTGATGAGGGGAA
GTATGAACAACAATATGAACAGTCAGAGGAGTTTCAGCAGGAACTGAAAT
TGAAGGTTAGAGAAATATTA
back to top